Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach12g00381 ATGGGATGCAATAACATAGAAACATCAGGGACATCTAAAGATCCGAGGAGTTTGGAAAATCATAACCCCCCACAATCAACTAAAAATCATTGTCTGTCAACTTCTTCGATCTCTTACTCATTCTACGACATGGCTGGGTTGACACCAGAGGGATCACAATTTGATGCTCGTCAATATGATGCTAAGATGAATGAGTTGCTTGGATCTGATGGAGAAGAGTTCTTCGCATCTTATGATGAAGTTTATGACAGCTTTGATGCTATGGGATTACAGGAAAACCTTCTTAGGGGTATTTATGCATATGGTTTTGAGAAGCCCTCTGCAATTCAACAAAGGGGGATTGTACCTTTCTGCAAGGGACTTGATGTGATTCAGCAAGCACAATCTGGAACTGGAAAAACTGCTACTTTTTGCTCTGGAATCTTGCAGCAGCTTGATTATAGCTTAGTTGAATGCCAGGCACTGGTTCTTGCTCCCACTCGCGAACTTGCACAACAAATTGAGAAGGTCATGCGAGCACTAGGTGACTATCTTGGAGTTAAGGTCCATGCTTGTGTGGGTGGTACTAGTGTTCGGGAAGATCAGCGCATCCTCTCAAGTGGTGTCCATGTTGTTGTTGGAACCCCTGGTCGTGTCTTTGACATGCTACGCAGACAATCTCTGCGCCCTGATTACATCAAAATGTTTGTGTTGGATGAGGCAGATGAGATGCTCTCTCGGGGATTTAAGGATCAGATCTATGATATTTTCCAGCTGCTTCCGCCAAAAATTCAGGTTGGGGTTTTCTCTGCCACAATGCCGCCTGAGGCCCTAGAGATCACTAGGAAGTTCATGAATAAACCTGTGAGAATCCTGGTAAAACGTGATGAGCTTACCCTGGAAGGTATCAAGCAATTTCATGTCAATGTGGATAAGGAGGAATGGAAGCTTGACACACTTTGTGATCTTTATGAGACCTTGGCAATTACTCAGAGTGTTATCTTTGTGAACACCAGGCGTAAGGTAGATTGGCTGACAGACAAGATGCGTAGCCGTGATCACACAGTTTCAGCCACCCATGGAGACATGGACCAAAACACAAGGGATATCATCATGAGGGAATTCCGTTCTGGCTCATCACGGGTTTTAATCACTACTGATCTTTTGGCCCGTGGTATTGATGTTCAGCAAGTCTCTCTTGTCATTAACTATGATCTCCCAACTCAGCCAGAGAACTATCTGCATCGGATAGGTCGTAGTGGCAGGTTTGGTAGGAAGGGTGTTGCTATCAACTTTGTGACCAGGGATGATGAAAGGATGCTCTTTGACATCCAAAAGTTTTATAACGTGGTAATTGAGGAGTTGCCAGCCAATGTTGCTGATCTCCTTTGA 1371 0.4435 MGCNNIETSGTSKDPRSLENHNPPQSTKNHCLSTSSISYSFYDMAGLTPEGSQFDARQYDAKMNELLGSDGEEFFASYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYSLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPANVADLL 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach12g00381 456 Pfam Helicase conserved C-terminal domain 309 417 IPR001650 -
Bach12g00381 456 CDD SF2_C_DEAD 296 426 - -
Bach12g00381 456 Gene3D - 292 456 IPR027417 -
Bach12g00381 456 PANTHER RNA HELICASE 60 440 - -
Bach12g00381 456 FunFam Eukaryotic initiation factor 4A-II 71 290 - -
Bach12g00381 456 SMART ultradead3 102 299 IPR014001 -
Bach12g00381 456 Pfam DEAD/DEAH box helicase 108 269 IPR011545 GO:0003676|GO:0005524
Bach12g00381 456 CDD DEADc_EIF4A 87 285 - -
Bach12g00381 456 Gene3D - 74 291 IPR027417 -
Bach12g00381 456 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 230 238 IPR000629 -
Bach12g00381 456 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 83 111 IPR014014 GO:0003724
Bach12g00381 456 FunFam Eukaryotic initiation factor 4A-III 291 456 - -
Bach12g00381 456 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 114 284 IPR014001 -
Bach12g00381 456 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 152 437 IPR027417 -
Bach12g00381 456 SMART helicmild6 336 417 IPR001650 -
Bach12g00381 456 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 295 456 IPR001650 -
Bach12g00381 456 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach12g00381 Bach-Chr12 2543360 2547105 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach12g00381 44 456 Eukaryotic Initiation Factors Gene Family AT1G72730 89.130 0.0 771
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach12g00381 K03257 - qsu:111990247 801.971
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bach12g00381 12 2543360 2547105 Bach12g00381 12 2543360 2547105 ECH