Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach12g00346 ATGGAGGAATATAGTAATCACCTGAGTGAAAACGCGGCGCCAAGGTCAAATTTCTTGTACTCTTCGCCTGCTGTTGGGTTTGGAAGAACTAGTGGCGGCTCAAGCGTTGGAAATCATCATCACCAGCTGCCTATCAACACCTTTCATCTTCAATCGAGTGGATCAGAGTGTTTTCAATCCGATCAATCTCACCCACCTGTCAAGACCGAAGCCAATACCACGCAGCCAGCTCAGATTTTTCACTATCCACTAATGAGAGGTAATCTTCACCAAGCGATGCAGCATCACCAGCACCACCAGGGAGGCAGCCAAAGTTCTAACGAAGTCGAAGCCATCAAAGCTAAAATCATTGCTCATCCTCAGTACTCCAACCTTTTAGAAGCTTACATGGATTGCCAAAAGGTTGGAGCACCACCCGAGGTGGTGGCGCGTCTAGCTGCGGCTCGGCAGGAGTTTGAGGCACGGCAGCGCGCAACCGTTAGTTCGAGGGAAACTTGCAAGGACCCAGAACTTGACCAGTTCATGGAAGCATACTATGACATGCTTGTGAAATATCGAGAGGAATTGACGAGGCCTATACAAGAGGCAATGGATTTCATGCGAAGAATAGAAGCTCAGCTAAATATGCTTTGCAATGGACCCGTCCGGATCTCTTCTGATGATAAATGTGAAGGCGTTGGCTCATCTGAAGAGGATCAAGACAACAGTGGTGGAGAAACAGAACTGCCAGAGATTGATCCCCGAGCTGAAGACCGTGAACTGAAAAATCACTTGTTAAGGAAATATAGTGGTTACTTAAGTAGCCTTAAGCAAGAACTTTCAAAGAAAAAGAAGAAAGGAAAATTGCCGAAGGATGCTAGGCAAAAGTTACTTAGCTGGTGGGAATTGCATTACAAATGGCCTTATCCTTCGGAATCAGAGAAAGTGGCATTGGCTGAAACAACTGGTTTGGACCAGAAGCAAATAAATAACTGGTTCATAAATCAAAGGAAGAGGCACTGGAAACCATCTGAAGACATGCAGTTCATGGTGATGGATGGACTGCATCCACCGAACGCAACTCTCTATATGGATGGTCACTACATGGCTGACGGCCACTACCGTCTAGGGCCATGA 1116 0.4651 MEEYSNHLSENAAPRSNFLYSSPAVGFGRTSGGSSVGNHHHQLPINTFHLQSSGSECFQSDQSHPPVKTEANTTQPAQIFHYPLMRGNLHQAMQHHQHHQGGSQSSNEVEAIKAKIIAHPQYSNLLEAYMDCQKVGAPPEVVARLAAARQEFEARQRATVSSRETCKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFMRRIEAQLNMLCNGPVRISSDDKCEGVGSSEEDQDNSGGETELPEIDPRAEDRELKNHLLRKYSGYLSSLKQELSKKKKKGKLPKDARQKLLSWWELHYKWPYPSESEKVALAETTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPPNATLYMDGHYMADGHYRLGP 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach12g00346 371 Pfam ELK domain 253 274 IPR005539 GO:0003677
Bach12g00346 371 Gene3D - 278 340 - -
Bach12g00346 371 Pfam KNOX2 domain 165 211 IPR005541 GO:0003677|GO:0005634
Bach12g00346 371 Pfam KNOX1 domain 111 153 IPR005540 GO:0003677|GO:0005634
Bach12g00346 371 Pfam Homeobox KN domain 293 332 IPR008422 GO:0003677|GO:0006355
Bach12g00346 371 ProSiteProfiles 'Homeobox' domain profile. 273 336 IPR001356 GO:0003677
Bach12g00346 371 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 92 342 - -
Bach12g00346 371 SMART ELK_2 253 274 IPR005539 GO:0003677
Bach12g00346 371 FunFam Homeobox protein knotted-1-like 2 278 340 - -
Bach12g00346 371 MobiDBLite consensus disorder prediction 221 250 - -
Bach12g00346 371 SMART HOX_1 275 340 IPR001356 GO:0003677
Bach12g00346 371 SMART KNOX1_2 110 154 IPR005540 GO:0003677|GO:0005634
Bach12g00346 371 ProSitePatterns 'Homeobox' domain signature. 311 334 IPR017970 GO:0000981|GO:0006355
Bach12g00346 371 CDD homeodomain 285 337 IPR001356 GO:0003677
Bach12g00346 371 ProSiteProfiles ELK domain profile. 253 273 IPR005539 GO:0003677
Bach12g00346 371 SUPERFAMILY Homeodomain-like 274 350 IPR009057 -
Bach12g00346 371 SMART KNOX2_2 161 212 IPR005541 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach12g00346 Bach-Chr12 2281686 2285415 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach12g00346 50 371 Homeobox Transcription Factor Family AT4G08150 69.069 1.26e-153 436
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Bach12g00346 KNOX2 5.3e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach12g00346 - - vum:124822256 582.793