Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach12g00333 CTGGCATTCAATTGAGTATGGATTCTGACCAAGCGAAGTTGTTTGTTGGTGGTATTTCTCGGGAGACAACCCAAGATATTCTGAAAGACCATTTTGCTAAGTACGGCTCTGTCCTTGGTTCCACGATTTCATTAGACCGGTGCACCAGAAATCCTAGAGGTTTTGGCTTCGTCAGGTTCTCTGATCTTTCTGCAGCCGATAAAGCCCTTCAAGATACGCATGTTATACTGGGAAGAACGGTAGAAGTCAAAAAAGCAATACCCAGAAGCGAACAGCAATACCATAACCAACCACAGAGTAGAGGGACAAGTAACTGTTGTAGTAATGACAGTAGCAGTTACCAGATTAGGACTAAAAAGATTTTTGTAGGAGGTTTATCAGCTAGTATCTCTGAGGAGGAGTTTAAGAAATATTTCGAAAGGTTTGGTAGAATAACAGATGTAGTCGTGATGCAGGATAATGTAACTCATCGTCCTAGGGGGTTTGGATTCATCACTTTCGACTCAGAAGAATCTGTTGAAAATGTTATGCTGAATAGCTTTCATGACTTGAATGGTAGACAAGTGGAGGTTAAGAGGGCTGTTCCAAAAGAGGGGAACAATGGCAATGATGGCGTTAATAAAATGAGATTTAAGGCTGGAAGAGGAGCACCTAAAAGTTATCCTCACTATCCTGGGTATATGGTCCCTGGCCCTGCTCCTATTCCCTGGTATGGTAATGATGGATTATATTATTATGGATCAGATGTCTATGGTTGTTGGTACCCTATGGGCGGGTATGGGGGGAATGGCTATGCAGTTCCGTCTAGTGCTCCTAGGAACTTCTGGTATGGGTCCATAGTAACCAGTGCTCAGGCATGCCAGGCGCCTTATGTCCATGCTTCTTCTAGTCCTGCATATGTGGGTGGTAGGTTTAGTTTAGTTAGTCCTGGAACCGGGGGTGTAACTGCCATGGTTGGGCAACCAATTTGA 971 0.4398 MDSDQAKLFVGGISRETTQDILKDHFAKYGSVLGSTISLDRCTRNPRGFGFVRFSDLSAADKALQDTHVILGRTVEVKKAIPRSEQQYHNQPQSRGTSNCCSNDSSSYQIRTKKIFVGGLSASISEEEFKKYFERFGRITDVVVMQDNVTHRPRGFGFITFDSEESVENVMLNSFHDLNGRQVEVKRAVPKEGNNGNDGVNKMRFKAGRGAPKSYPHYPGYMVPGPAPIPWYGNDGLYYYGSDVYGCWYPMGGYGGNGYAVPSSAPRNFWYGSIVTSAQACQAPYVHASSSPAYVGGRFSLVSPGTGGVTAMVGQPI 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach12g00333 317 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 113 190 IPR000504 GO:0003723
Bach12g00333 317 MobiDBLite consensus disorder prediction 83 103 - -
Bach12g00333 317 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 115 173 IPR000504 GO:0003723
Bach12g00333 317 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
Bach12g00333 317 SMART rrm1_1 114 186 IPR000504 GO:0003723
Bach12g00333 317 SMART rrm1_1 7 78 IPR000504 GO:0003723
Bach12g00333 317 SUPERFAMILY RNA-binding domain, RBD 3 102 IPR035979 GO:0003676
Bach12g00333 317 Gene3D - 110 200 IPR012677 -
Bach12g00333 317 SUPERFAMILY RNA-binding domain, RBD 109 205 IPR035979 GO:0003676
Bach12g00333 317 CDD RRM2_Hrp1p 114 191 - -
Bach12g00333 317 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 290 - -
Bach12g00333 317 FunFam RNA-binding protein 1 109 199 - -
Bach12g00333 317 Gene3D - 1 109 IPR012677 -
Bach12g00333 317 MobiDBLite consensus disorder prediction 84 103 - -
Bach12g00333 317 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach12g00333 Bach-Chr12 2180872 2182144 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach12g00333 2 305 Eukaryotic Initiation Factors Gene Family AT3G16380 25.552 5.82e-14 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach12g00333 K14411 - gmx:100816822 451.825
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bach12g00333 12 2180872 2182144 Bach12g00333 12 2180872 2182144 ECH