Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach12g00260 ATGGCGCAGATTCAGGTGCAGCATCAGAGTCCCCCCTCGGCTACGAACGGTGTGGCGACGACCCCAGGTGCCAACCAGTTTGTGACAACGTCGTTGTATGTCGGGGATCTTGACCAGAATGTAAGCGATTCGCAGCTTTACGATCTCTTCAACCAGGTCGGGCAAGTTGTTTCTGTTCGGGTCTGTAGGGACTTGACAAGCCGTCGATCCCTCGGTTACGGTTATGTTAATTACAGTAACCCTCAGGATGCGGCAAGAGCAACTGATATGCTGAATTTCACTCCACTGAACGGCAAGCCAATTAGGATTATGTATTCTCATCGGGATCCTAGCATTCGGAAGAGTGGAACAGCAAATATATTTATTAAGAATTTGGATAAGGCCATCGACCACAAAGCCTTACATGAGACTTTTTCTGCTTTTGGAACTATTATTTCTTGCAAGATAGCAACTGATGCTTCTGGCCACTCCAAAGGCTATGGTTTTGTACAATTTGACAATGAAGGGTCTGCACAGAATGCAATTGACAAATTAAATGGCATGCTGCTAAATGATAAACAGGTCTACGTAGGACATTTCCTACGAAAGCAGGATAGAGAAAGTGTTTTAAGTAGGACAAAATTTAATAATGTCTATGTGAAAAACCTGTCAGAGTCGATGACAGATGAAGACTTGAAGAAAATTTTTGGAGAATATGGGACCATTACTAGTGCTGTAGTAATGAGAGATGTAGATGGCAAATCGAAGTGTTTTGGTTTTGTCAATTTTGATAATGCAGATGACGCTGTTACAGCTGTTGAGGCACTTAACGGAAAGAAATTTGATGATAAGGAGTGGTATGTCGGAAAAGCCCAGAAAAAATATGAAAGAGAGCTTGAACTGAAAGAAAAATTTGAGCAGAGTGTGAAGGAAGTTGTTGACAAATATCAAGGCGTAAACTTGTATCTCAAGAACTTAGATGATAGCATTGATGATGAAAAACTCAAGGAACTGTTCTCTGAGTTTGGTACAATAACCTCATGCAAGGTTATGCGGGACCCCAATGGAATCAGTAGAGGATCAGGATTTGTTGCATTTTCAACTCCCGAGGAGGCATCTAGAGCTCTTGCAGAGATGAATGGTAAAATGGTTGCTGGAAAGCCTCTGTATGTTGCTATTGCACAGAGGAAAGAAGATAGAAGAGCAAGGTTACAGGCACAATTTTCGCAAATGAGGCCTGTTGCAATGTCTCCTGTTGCCCCTCGGATGCCAATGTACCCTCCTGGTGCGCCAGGTCTAGCACAACAATTTTTGTATGGGCAAGCTCCTCCGGCCATCATTCCTCCACAAGCGGGTTTTGGTTACCAGCAACAACTAGTTCCTGGGATGAGGCCTGGTGGTGCTCCAATCCCAAACTTCTTTGTCCCCATGGTTCAGCAGGGCAGCCAACAAGGCCAGCGCCCTGGTGGACGGCGAGGAGCAGGTCCTGTGCAACAACCCCAGCAGCCAGTGCCACTGATGCAACATCAGATGCTTCCAAGGGGGCGTGTCTACCGTTACCCCCCTGGTCGCAACATGCAAGATGTTCAAATGCCAGGTGTAGCAGGGGGAATGCTTCCAGTCCCTTATGAAATGGGCGGTGTACCAATTCGGGATGCGGTGGGTCAGCCAATGCCCATTCAGGCCTTGGCAACTGCCCTTGCAAATGCTCCTCTTGAGCAGCAGAGGACAATGCTGGGCGAAGCATTGTACCCGCTTGTAGATCAGTTGGAGCACGATTCTGCGGCCAAGGTCACAGGCATGCTCCTGGAGATGGACCAGCCTGAGGTATTACATCTGATCGAGTCACCAGACGCTCTTAGGGCCAAAGTGTCTGAGGCCATGGATGTCCTTAGAAATGTTGCCCAGCAGCAAGTTAACAGCCCTGCTGATCAATTGGCCTCACTCTCTCTCAACGACAATCTTGTCTCTTAG 1953 0.4695 MAQIQVQHQSPPSATNGVATTPGANQFVTTSLYVGDLDQNVSDSQLYDLFNQVGQVVSVRVCRDLTSRRSLGYGYVNYSNPQDAARATDMLNFTPLNGKPIRIMYSHRDPSIRKSGTANIFIKNLDKAIDHKALHETFSAFGTIISCKIATDASGHSKGYGFVQFDNEGSAQNAIDKLNGMLLNDKQVYVGHFLRKQDRESVLSRTKFNNVYVKNLSESMTDEDLKKIFGEYGTITSAVVMRDVDGKSKCFGFVNFDNADDAVTAVEALNGKKFDDKEWYVGKAQKKYERELELKEKFEQSVKEVVDKYQGVNLYLKNLDDSIDDEKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTPEEASRALAEMNGKMVAGKPLYVAIAQRKEDRRARLQAQFSQMRPVAMSPVAPRMPMYPPGAPGLAQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPGGAPIPNFFVPMVQQGSQQGQRPGGRRGAGPVQQPQQPVPLMQHQMLPRGRVYRYPPGRNMQDVQMPGVAGGMLPVPYEMGGVPIRDAVGQPMPIQALATALANAPLEQQRTMLGEALYPLVDQLEHDSAAKVTGMLLEMDQPEVLHLIESPDALRAKVSEAMDVLRNVAQQQVNSPADQLASLSLNDNLVS 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach12g00260 650 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 30 108 IPR000504 GO:0003723
Bach12g00260 650 Pfam Poly-adenylate binding protein, unique domain 560 624 IPR002004 GO:0003723
Bach12g00260 650 SUPERFAMILY PABC (PABP) domain 494 642 IPR036053 GO:0003723
Bach12g00260 650 CDD RRM1_I_PABPs 31 110 IPR034364 -
Bach12g00260 650 Gene3D - 118 206 IPR012677 -
Bach12g00260 650 FunFam Polyadenylate-binding protein 295 400 - -
Bach12g00260 650 SMART poly_2 564 627 IPR002004 GO:0003723
Bach12g00260 650 MobiDBLite consensus disorder prediction 473 495 - -
Bach12g00260 650 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 118 195 IPR000504 GO:0003723
Bach12g00260 650 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 552 629 IPR002004 GO:0003723
Bach12g00260 650 FunFam Polyadenylate-binding protein 199 294 - -
Bach12g00260 650 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 209 286 IPR000504 GO:0003723
Bach12g00260 650 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 312 389 IPR000504 GO:0003723
Bach12g00260 650 CDD RRM4_I_PABPs 311 389 - -
Bach12g00260 650 FunFam Polyadenylate-binding protein 119 192 - -
Bach12g00260 650 Gene3D - 310 410 IPR012677 -
Bach12g00260 650 CDD RRM2_I_PABPs 116 192 IPR045305 -
Bach12g00260 650 FunFam Polyadenylate-binding protein 17 118 - -
Bach12g00260 650 Gene3D - 207 309 IPR012677 -
Bach12g00260 650 SMART rrm1_1 210 282 IPR000504 GO:0003723
Bach12g00260 650 SMART rrm1_1 31 104 IPR000504 GO:0003723
Bach12g00260 650 SMART rrm1_1 119 191 IPR000504 GO:0003723
Bach12g00260 650 SMART rrm1_1 313 385 IPR000504 GO:0003723
Bach12g00260 650 FunFam Polyadenylate-binding protein 548 630 - -
Bach12g00260 650 SUPERFAMILY RNA-binding domain, RBD 30 199 IPR035979 GO:0003676
Bach12g00260 650 MobiDBLite consensus disorder prediction 1 21 - -
Bach12g00260 650 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 31 625 IPR006515 GO:0003723
Bach12g00260 650 SUPERFAMILY RNA-binding domain, RBD 310 406 IPR035979 GO:0003676
Bach12g00260 650 SMART rrm2_1 210 282 IPR003954 GO:0003676
Bach12g00260 650 SMART rrm2_1 31 104 IPR003954 GO:0003676
Bach12g00260 650 SMART rrm2_1 313 385 IPR003954 GO:0003676
Bach12g00260 650 SMART rrm2_1 119 191 IPR003954 GO:0003676
Bach12g00260 650 CDD RRM3_I_PABPs 208 287 - -
Bach12g00260 650 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 32 102 IPR000504 GO:0003723
Bach12g00260 650 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 120 188 IPR000504 GO:0003723
Bach12g00260 650 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 314 382 IPR000504 GO:0003723
Bach12g00260 650 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 211 279 IPR000504 GO:0003723
Bach12g00260 650 Gene3D - 548 631 - -
Bach12g00260 650 Gene3D - 1 117 IPR012677 -
Bach12g00260 650 PANTHER RNA BINDING PROTEIN 29 92 - -
Bach12g00260 650 SUPERFAMILY RNA-binding domain, RBD 208 290 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach12g00260 Bach-Chr12 1746778 1750407 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach12g00260 1 645 Eukaryotic Initiation Factors Gene Family AT4G34110 66.718 0.0 860
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach12g00260 K13126 - gmx:100784442 1049.65