Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach12g00189 ATGGCAAGTGGGTTTCGGGAATCAACAAGCAGGTCACCGCCAAGCCCTTCCTGCTCAAACAATAATAATAATGACGCAGGCAATTTTGAATGCAATATTTGCTTTGACTTAGCTCAAGACCCAATAATTACTTTGTGTGGTCATCTGTTTTGCTGGCCTTGTCTTTACAAATGGCTTCACTTCCATTCACAATCACGAGAATGCCCGGTGTGCAAAGCCCTCATTGAGGAGGAGAAGTTGGTTCCACTATACGGGAGAGGAAAGACATCAACTGACCCAAGATCAAAGTCTATTCCTGGCATTAATATTCCACATCGTCCAGCTGGTCAGAGACCTGAAACTGCTCCTCCCCCTGAATCAAATCATTTTCCTCAACATGGGTTTGGATTTATGGGTGGGTTGGGAGGATTTGCACCAATGGCTACAGCAAGATTTGGGAATTTCACATTATCTGCAGCATTTGGTGGTTTAATTCCATCCTTATTTAACTTTCAAATGCATGGGTTTCATGATGCAACCATGTATGGTGGAACAGCTGGTTATCCCTATGGATTTTCTAATTCATTTCATGGTGGCCATGCCCATGGATATCCTCAGCACACCGGTCAAGGGCAACAAGATTATTATCTGAAGCGCCTGCTTCTGTTAGTTGTTTTCTGTGTCGTTCTTGCTTTTATTTGGCAATAG 687 0.4338 MASGFRESTSRSPPSPSCSNNNNNDAGNFECNICFDLAQDPIITLCGHLFCWPCLYKWLHFHSQSRECPVCKALIEEEKLVPLYGRGKTSTDPRSKSIPGINIPHRPAGQRPETAPPPESNHFPQHGFGFMGGLGGFAPMATARFGNFTLSAAFGGLIPSLFNFQMHGFHDATMYGGTAGYPYGFSNSFHGGHAHGYPQHTGQGQQDYYLKRLLLLVVFCVVLAFIWQ 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach12g00189 228 Pfam Zinc finger, C3HC4 type (RING finger) 31 71 IPR018957 GO:0046872
Bach12g00189 228 ProSiteProfiles Zinc finger RING-type profile. 31 72 IPR001841 -
Bach12g00189 228 SMART ring_2 31 71 IPR001841 -
Bach12g00189 228 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 17 223 IPR045103 GO:0005783|GO:0006511|GO:0061630
Bach12g00189 228 SUPERFAMILY RING/U-box 28 84 - -
Bach12g00189 228 FunFam E3 ubiquitin-protein ligase RNF185 isoform X2 14 85 - -
Bach12g00189 228 ProSitePatterns Zinc finger RING-type signature. 46 55 IPR017907 -
Bach12g00189 228 MobiDBLite consensus disorder prediction 85 119 - -
Bach12g00189 228 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 15 85 IPR013083 -
Bach12g00189 228 CDD RING-HC_AtRMA-like 29 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach12g00189 Bach-Chr12 1310513 1311199 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach12g00189 16 211 C3H Transcription Factor Family AT1G19310 67.805 1.49e-92 269
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach12g00189 K10666 - rcu:8260936 392.889
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bach12g00189 12 1310513 1311199 Bach4g00596 4 4010226 4012534 ECH
Bach12g00189 12 1310513 1311199 Bach12g00189 12 1310513 1311199 ECH