Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach12g00165 ATGCAGCTGAGAGATATTTTTTGCGAGCTGAAGCAGATGCGAGATGGCATGGGAAATATATCTGGAAGAGGGCCAGGGACAAGGCATATGCATCGCCGTGGAAAATCACATATTGCACCCGAGTGGTCTTCAACACCACCGCCACCACCATCATCATTGATAGTGACTCGAGAGAGCCATTGGGCGAACTTACCCCCTGAGTTGCTATTAGACATTATACAAAGAGTAGAAGCCAGTGAAACTTCCTGGCCTGCCAGGAGAGCGGTTGTAGCTTGTGCCTCCGTCTGTAGAACCTGGAGGGAGATAACCAAGGAGGTAGTCAAGACACCGGAACAGTGTGGGCGCTTTACGTTCCCTATATCACTGAAGCAGCCCGGGCCAAGAGATACTCCAATACAGTGTTTTATTAAGCGAGAAAGGATGACCTCAACATATTATCTATATCTTGGTCTAAGCCCTGCCCTTTCTGGGGACGTTAGCAAACTGCTATTGGCAGCAAAGAAGATTAGAAGAGCAACATGTACAGAATTTTTAATATCCTTGGTTGCAGATGATTTCTCTCGAGCTAGCAATACTTACGTTGGAAAACTGAGGTCTAATTTTCTGGATACCAAGTTTATGGTCTTGGATAGTCAGCCACCGCAGGATTCTTCCCTTCACTCAAATTGCAAATTGCAGCAAAGAATCCATTTGAAGCAAGTACTTCCAAGGTTTTCTGCTGTTAATTATCATGTGGCTACCATATGTTATGAGCTTAATATTCTCCGCACGAGAGGTCCAAGGAGAATGAGGTGTACCATCAACTCAATCCCCATATCTGCAGTCCAAGAAGGGGGCACTGCCCCTACTCCTTTGAAATTTGCCAATTGCCTTGATGAGAATTTATATACTTTGCCCATTTCAAAAGGAAAGAAGCCAGGAGTTGAGTTTAGATCCAGTAGCACTATTGAGAAGCCTCCAGAATCAACCCATAATGTAAGGGAGCCACTGATTTTGAAAAATAAATCTCCTAGATGGCATGAGCAACTGCAATGTTGGTGCTTAAATTTTAAAGGGCGAGTGACGGTGGCTTCTGTCAAGAACTTCCAGCTTGTAGCAGCTGCAGAACCTCACCAGAATGTTTCAGTTGCTGAACAAGATAAAGTGATACTGCAATTTGGAAAAATTGGGAAAGATATATTTACAATGGATTGCCGTTACCCCCTCTCTGCTTTTCAAGCATTTGCAATATGTTTGAGCAGCTTCGACACTAAACCAGCTTGTGAATGA 1269 0.4405 MQLRDIFCELKQMRDGMGNISGRGPGTRHMHRRGKSHIAPEWSSTPPPPPSSLIVTRESHWANLPPELLLDIIQRVEASETSWPARRAVVACASVCRTWREITKEVVKTPEQCGRFTFPISLKQPGPRDTPIQCFIKRERMTSTYYLYLGLSPALSGDVSKLLLAAKKIRRATCTEFLISLVADDFSRASNTYVGKLRSNFLDTKFMVLDSQPPQDSSLHSNCKLQQRIHLKQVLPRFSAVNYHVATICYELNILRTRGPRRMRCTINSIPISAVQEGGTAPTPLKFANCLDENLYTLPISKGKKPGVEFRSSSTIEKPPESTHNVREPLILKNKSPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAAEPHQNVSVAEQDKVILQFGKIGKDIFTMDCRYPLSAFQAFAICLSSFDTKPACE 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach12g00165 422 SUPERFAMILY F-box domain 59 105 IPR036047 GO:0005515
Bach12g00165 422 ProSitePatterns Tub family signature 1. 350 363 IPR018066 -
Bach12g00165 422 Pfam Tub family 122 417 IPR000007 -
Bach12g00165 422 Gene3D - 56 107 - -
Bach12g00165 422 Pfam F-box domain 61 107 IPR001810 GO:0005515
Bach12g00165 422 CDD F-box_AtTLP-like 61 105 - -
Bach12g00165 422 Gene3D Tubby Protein; Chain A 119 422 IPR025659 -
Bach12g00165 422 MobiDBLite consensus disorder prediction 17 50 - -
Bach12g00165 422 PANTHER TUBBY-RELATED 29 420 - -
Bach12g00165 422 SUPERFAMILY Tubby C-terminal domain-like 110 422 IPR025659 -
Bach12g00165 422 PRINTS Tubby superfamily signature 400 422 IPR000007 -
Bach12g00165 422 PRINTS Tubby superfamily signature 350 366 IPR000007 -
Bach12g00165 422 PRINTS Tubby superfamily signature 332 349 IPR000007 -
Bach12g00165 422 PRINTS Tubby superfamily signature 379 398 IPR000007 -
Bach12g00165 422 PRINTS Tubby superfamily signature 193 217 IPR000007 -
Bach12g00165 422 PRINTS Tubby superfamily signature 242 269 IPR000007 -
Bach12g00165 422 PRINTS Tubby superfamily signature 177 193 IPR000007 -
Bach12g00165 422 ProSitePatterns Tub family signature 2. 407 422 IPR018066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach12g00165 Bach-Chr12 1133406 1135074 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach12g00165 28 422 TUB Transcription Factor Family AT1G47270 62.250 4.48e-166 470
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Bach12g00165 Tub 7.4e-103 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach12g00165 K19600 - gmx:100796250 640.573