Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach12g00056 ATGTCGTCACTGGCCATAAACACTAATTGGAATGGCGCAGAGGCTAAGAATTACCCTTCTCCACTTGCCTCTCACGAGAACGTGGTCAGGGATCCTACTGTTTTCTGGGACACTCTCAGGCGCTTTCACTTTGTTATGGGCACCAAATTTATGATTCCTGTAATCGGAGGAAAGGAACTGGATTTGCACGTTCTTTACGTGGAAGTTACTAGAAGAAGTGGCTATGAAAAGGTAGTTGCAGAGAAGAAATGGAGGGAAGTGGGTAATATATTCAGATTCTCTCCTACAACTACAAGTGCTTCTTTTGTATTGAGGAAGCACTACTTCAGTCTTCTTTACCATTACGAGCAAGTTTACTTCTTCAAGGCTCGGGGTCCGGTGTATGCTCCATCAGATGCATTTTCTGTTGGCAACCAGTGTTGGAGACCTGAATTAGCTATTGTGGAATATTCGCCTAAGCCCTTGAATGAGCAACCTGATTCCCATATCGGAGATGCTTCATGCTTTACTGCAATTGGAACGATCGAGGGGAAATTTGATTGTGGTTATTTGGTGTCTGTGAAACTGGGTTCGGAGGTTCTTAGAGGTGTGCTTTACCATCCGGAGCAATCAGATCCCTCTACATCAATTTCATACAATCACAAATGTCGGCGTAGGCGGAGGAGAAACAAAAGAAGGGGGGATCCCAACCACCCGAAGCCAAATAGGAGTGGGTATAACTTTTTCTTTGCAGAAAAACATTACAAGCTGAAAGCCCTGTACCCAAACAGAGAAAGGGCGTTTACTAAAATGATCGGCCAATCATGGAACAGTCTTAGCCCAGAGGAGAGAATGGTACTTCTTTTTCCCTTCTCTTTTCGGCATTTTTCCCCTTTATGTATTCAATTTGATTTTCTTTCTTGTCTTGTGCAGGTTTATCAGAACATTGGCTTGAGAGACAAGGAAAGGTACAGGAGAGAACTGAGGGAGTACAAAGAGAGAATGAAGCAACAATAG 996 0.4357 MSSLAINTNWNGAEAKNYPSPLASHENVVRDPTVFWDTLRRFHFVMGTKFMIPVIGGKELDLHVLYVEVTRRSGYEKVVAEKKWREVGNIFRFSPTTTSASFVLRKHYFSLLYHYEQVYFFKARGPVYAPSDAFSVGNQCWRPELAIVEYSPKPLNEQPDSHIGDASCFTAIGTIEGKFDCGYLVSVKLGSEVLRGVLYHPEQSDPSTSISYNHKCRRRRRRNKRRGDPNHPKPNRSGYNFFFAEKHYKLKALYPNRERAFTKMIGQSWNSLSPEERMVLLFPFSFRHFSPLCIQFDFLSCLVQVYQNIGLRDKERYRRELREYKERMKQQ 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach12g00056 331 MobiDBLite consensus disorder prediction 202 238 - -
Bach12g00056 331 SMART bright_3 30 121 IPR001606 GO:0003677
Bach12g00056 331 CDD ARID_HMGB9-like 31 116 IPR045303 GO:0003677
Bach12g00056 331 SMART hmgende2 231 326 IPR009071 -
Bach12g00056 331 Gene3D - 19 126 IPR036431 GO:0003677
Bach12g00056 331 Pfam ARID/BRIGHT DNA binding domain 35 116 IPR001606 GO:0003677
Bach12g00056 331 Gene3D High mobility group box domain 216 331 IPR036910 -
Bach12g00056 331 Coils Coil 311 331 - -
Bach12g00056 331 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 7 330 - -
Bach12g00056 331 MobiDBLite consensus disorder prediction 213 229 - -
Bach12g00056 331 SUPERFAMILY ARID-like 25 127 IPR036431 GO:0003677
Bach12g00056 331 SMART ARID_2 26 116 - -
Bach12g00056 331 SUPERFAMILY HMG-box 223 278 IPR036910 -
Bach12g00056 331 ProSiteProfiles ARID domain profile. 29 120 IPR001606 GO:0003677
Bach12g00056 331 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 232 325 IPR009071 -
Bach12g00056 331 Pfam HMG (high mobility group) box 232 278 IPR009071 -
Bach12g00056 331 CDD HMG-box_AtHMGB9-like 232 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach12g00056 Bach-Chr12 410967 412590 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach12g00056 13 329 ARID Transcription Factor Family AT1G76110 59.880 1.94e-129 371
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Bach12g00056 ARID 3.7e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach12g00056 - - cave:132190320 457.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bach12g00056 12 410967 412590 Bach12g00056 12 410967 412590 ECH