Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach12g00032 ATGGACGGAGAAAGAGATAAAGGAAAAGGAGGTCAAACAGTGGAGGTAGGAAATGAGTTGAATGCGGAATTTGATTTGTTGGAAGAAGTACAGGGTGTGATTGAAGCGGTGGCTCAATTTGGGGATTACCGAATGACCCAAAGGAAAGAGTGCCATACTCTTGTTAGGCGTTTGAAACTCTTGTTGCCACTTATCGAAGAAATTCGTGACATCGATTCTCCAATTCCAGAGAAGGGCATAACCTGGTTGTGTAATATGAAGGATACGCTACTTTTGACCAAGAAATTGTTGCAATTATGTAGCGACGGGAGCAAGATTCACCTGGCACTCGAGAACGAGGCTGTTATGATCAAATTTCGGTCCGTCTATGAAGAATTGAGCAAAGTGCTTGGTGCTTCTCCTTGTGAAGAGCTAGGGATCTCAGACGAAGTGAAAGAACAGCTTGAGCTAATGTGCCTGCAACTCAGGCGGGCGAAGGGGCGAACGGATACTCAGGACATAGAACTTGCAATGGATATGATGGTGGTATTTTCTAAAAAGAATGATCGGAATGCTGACAGCGCTATCATTGAAAGGCTAGCTAAAAAGATGGAGCTTTATACCATCGAGGATCTTAAGATAGAAACGGTGGCTGTAAGGAAACTTGCTGAAGAAAAAAAAGGACAAAATGCAGAGAGTACCCAGCAAATAATTTGCCTTCTTAACAAATTCAGACGGATTGCAGGCATGGAAGAAACCAATGTTCTAGATGATCCTGTCATGCCCAGAACGCTTGAGAAGTACACATCTTTGGTCATCCCTCACGAATTTCTCTGCCCAATTACACTAGAAATAATGACAGATCCTGTTATTGTTGCAAGTGGACAGACTTATGAAAGGGAAAGCATAGAGAAGTGGTTCGCATCCAATCACAAGACCTGCCCAAAGACTAGGCAAATTCTGGCTCACCTGTCATTAGCACCAAACTATGCCCTGAAAAACTTGATCTCCCAGTGGTGTGAGAAAAACAAGTTTCAGCTTGCTAAAAAAGATACTTGTTCAGAACCCAAGGAAAATAAAGAGGAACTAGCATCTTTGGTTGAGAATCTATCGTCAATTCATTTAGAAGTGCAAAGGAAGGCAGTGAAGACGATACGACTGATATCCAAGGAGAACTCTGAGAAGAGAGTGTTGATTGCTGAGCATGGAGGAATACCACCATTAGTGCAACTCCTCTCATATCCAGATTCCGCAATACAGGCGCATGCGGTAACTGCTCTTTTGAATTTATCTATTGATGAAACTAACAAGCGACTCATATCTAGAGAAGGGGCTATTCCATCAATAATAGAAGTATTGAAGAATGGGAGTACCGAGGGTAGAGAAAATTCTGCGGCTGCTTTATTTAGTTTGTCAATGCTGGACGAGAATAAAGAAATTGTTGGTTTATCAAATGGCATCCCCCCTTTGGTAGAATTGTTGCGGGAAGGGACAATTAGAGGTAAAAAAGATGCTGCTACAGCTCTCTTTAACTTATCTCTCAACCACGCAAATAAGAAAAGGACCATTGAAGCCGGGATTGTGACGCCCTTGTTTCAACTGCTTAGGGATAAAAACATGGGCATGATTGATGAAGCCCTTTCCATCCTATTACTTCTTGCTTCTAATCCAGACGGAAGGCGCGAGATTGGACAACTCACCTTCATTGAAAATCTTGTTGATTTCATACGGGATGGAACCCCCAAGAATAAGGAATGTGCAGCATCTGTTCTTCTTGAGTTGGCTTCTAGTAATTCATCTTATATACTCGCAGCACTTCAGTTTGGAGTATACGAGCATTTAATTGAGATCAAAGAAAGTGGAACAAATAGAGCACAGAGGAAAGCAAAGGCACTCTTAGATCTCATAAGCAAGAGTGAGCAAATTTAA 1908 0.4203 MDGERDKGKGGQTVEVGNELNAEFDLLEEVQGVIEAVAQFGDYRMTQRKECHTLVRRLKLLLPLIEEIRDIDSPIPEKGITWLCNMKDTLLLTKKLLQLCSDGSKIHLALENEAVMIKFRSVYEELSKVLGASPCEELGISDEVKEQLELMCLQLRRAKGRTDTQDIELAMDMMVVFSKKNDRNADSAIIERLAKKMELYTIEDLKIETVAVRKLAEEKKGQNAESTQQIICLLNKFRRIAGMEETNVLDDPVMPRTLEKYTSLVIPHEFLCPITLEIMTDPVIVASGQTYERESIEKWFASNHKTCPKTRQILAHLSLAPNYALKNLISQWCEKNKFQLAKKDTCSEPKENKEELASLVENLSSIHLEVQRKAVKTIRLISKENSEKRVLIAEHGGIPPLVQLLSYPDSAIQAHAVTALLNLSIDETNKRLISREGAIPSIIEVLKNGSTEGRENSAAALFSLSMLDENKEIVGLSNGIPPLVELLREGTIRGKKDAATALFNLSLNHANKKRTIEAGIVTPLFQLLRDKNMGMIDEALSILLLLASNPDGRREIGQLTFIENLVDFIRDGTPKNKECAASVLLELASSNSSYILAALQFGVYEHLIEIKESGTNRAQRKAKALLDLISKSEQI 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach12g00032 635 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 478 520 IPR000225 GO:0005515
Bach12g00032 635 FunFam RING-type E3 ubiquitin transferase 340 635 - -
Bach12g00032 635 Pfam Armadillo/beta-catenin-like repeat 385 424 IPR000225 GO:0005515
Bach12g00032 635 Pfam Armadillo/beta-catenin-like repeat 468 506 IPR000225 GO:0005515
Bach12g00032 635 PANTHER U BOX DOMAIN-CONTAINING 48 629 - -
Bach12g00032 635 ProSiteProfiles U-box domain profile. 265 339 IPR003613 GO:0004842|GO:0016567
Bach12g00032 635 Pfam U-box domain 266 337 IPR003613 GO:0004842|GO:0016567
Bach12g00032 635 CDD RING-Ubox_PUB 267 319 IPR045210 -
Bach12g00032 635 Gene3D - 348 627 IPR011989 -
Bach12g00032 635 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 266 341 IPR013083 -
Bach12g00032 635 FunFam RING-type E3 ubiquitin transferase 265 340 - -
Bach12g00032 635 SUPERFAMILY ARM repeat 356 629 IPR016024 -
Bach12g00032 635 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 396 438 IPR000225 GO:0005515
Bach12g00032 635 Gene3D - 21 132 IPR036537 GO:0007166
Bach12g00032 635 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 437 479 IPR000225 GO:0005515
Bach12g00032 635 SUPERFAMILY RING/U-box 265 339 - -
Bach12g00032 635 SMART arm_5 426 466 IPR000225 GO:0005515
Bach12g00032 635 SMART arm_5 508 548 IPR000225 GO:0005515
Bach12g00032 635 SMART arm_5 467 507 IPR000225 GO:0005515
Bach12g00032 635 SMART arm_5 385 425 IPR000225 GO:0005515
Bach12g00032 635 SMART arm_5 549 589 IPR000225 GO:0005515
Bach12g00032 635 FunFam RING-type E3 ubiquitin transferase 23 136 - -
Bach12g00032 635 SMART Ubox_2 269 332 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach12g00032 Bach-Chr12 249137 251622 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach12g00032 26 635 U-box Gene Family AT5G42340 64.812 0.0 768
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach12g00032 - - cave:132189210 890.567