Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach11g01409 GGAAATTCCACCCCGGCGCGAGCACAGCTAGTTCAGCTCTTTCGCCGCAACACTTTCCTCTCTGGCAACAACAGAACCGAATCTGCAGATACTGGCGAAAAATAAGCTTCTTCCTGAATTACTTTGTCAGACTTTTAGACACTTACGATGGGTTTTGATGAATATGAGTACTTAGAGGAAACAGTTGAAAAGCCTGAACATAAGAAGGAGAAGGAGAAGGAGAAGGAAACAGTTAATGGAGGTAATGGAACTGTAAAATCTGAAGAGAGAGATCGTAGTCGGAGGCATAAGGTTGATGTGAAGGATGATGATGATGTTGAAAACCGTTTGAAGCATTCAAAATCTAGAGATGATTCTCATGATTATGAACAGCTGAGAGAAAGTGGCACATCTCATCACCGTTCTCGGTCTAGAGATACAAACAAGGAGAAGGATCAGCACAGAAGTAGCCGGGATCGTAGGGATAGGGAGAGAGACAGGGATGACAGATATGGAAGGGAGGGACACAAAGAGCGGGATAGTAACCGAGAAAGAGACAGAAGAGACCGTGGCAATGATAATGAAAGAGAAAGGGAGAGAGAGCGCTCACAGCGAAGCAGGAGTAGATCTGAGAGGCATCGAAGTGATCTCGATGAAAGAGACAGAGAGCAGAGTCATGACAGGGACTATAGAGACAGAGAAAGAAGTCGGGAAAAGGATTACAAAGACAAAGAAAGGGAGAGGGAATCAAGGGAAAAGGACAGGGAAAACAGACGGAAAGAGAAAAAGGAAGAAGCAGCAGAACCTGAGGCTGATCCTGAACGGGATCAGAGGACTGTGTTTGCTTATCAGATTTCTCTCAAAGCAGATGAAAGAGATGTATATGAGTTCTTTTCAAGGGCTGGCAAGGTGCGAGATGTCCGTCTGATAATGGACCGCAATTCAAGACGCTCTAAGGGTGTTGGGTACATTGAGTTCTATGATGTCATGTCTGTCCCTATGGCAATAGCACTTTCTGGCCAGCCACTTCGTGGTCAACCAGTGATGGTGAAGCCATCTGAAGCAGAAAAGAATTTGGTTCAATCTACTACATCTGTTCCCACTGGACCCTCTGGACTTATAGGCCCTTATTCTGGAGGAGCAAGAAGGCTGTATGTTGGCAATCTGCATTTCAGTATCACTGAAGTTGATCTTCGTAGGGTGTTCGAGTCATTTGGTCAGGTGGAGCTAGTTCAGCTGCCTCTTGATGAAACTGGGCATTGCAAAGGTTTTGGCTTTGTGCAGTTTATACGTCTTGAAGATGCCAGAAATGCCCAGAGTTTGAATGGGCAATTAGAAATTGGTGGCAGGACAATCAAGGTATCAGCAGTTACTGATCAATCTGGAATGTCGGATGCTGAACTTGGAAGAAATACTGGTGATTTGGATGACGATGAAGGTGGTGGCTTGTCCCTTAATGCAAGTTCCCGAGCACTGCTCATGCAGAAGTTGGATCGTAGTGGCACTGCATCAAGTGTTGGTGGTCCCTTCGGTAATTCTGTTGTAAACAGTACAGGCCTTAATCCACCAGCAGCACCACTTCTAGGAGCTGTACCAGGGGTTTCTCAGCTTGTTTCCCCTCTTCCTTCTGTTCCTACACAAGCTGGACTGTCGAGTGGAGGTCTCCTAGCTCCCACATCTACTGCTCCTACAATTCCTTCTTTTGATACTATTGGTGCTCCTACTGAATGCTTACTGTTAAAGAATATGTTCGATCCAAAGAATGAGAAGGAGCCGGATTTTGATTTGGATATTAAAGAAGATGTTGAAGATGAATGCTCTAGGTTTGGAAGGATAAAACATATATACGTGGATAAGAATAGTGCTGGACTTGTCTATTTGCGATTTGAAAATACTCAATCGGCAATGAATGCACAGCGAGCTCTGCATGGGAGATGGTTTGCTGGGAAGATGATCACTGCAAGCTTTATGGTTCCCCAGTCTTACGAGGATAAATTTCCAGAGAGCAGATAAAATTCTTGAACCATGTATTCTGAAGTCAATATTTTGCTTATCTTATGGTCAGATATTTACTCTTGGGCAATGATTGCATGTTGAAGAATCTTTTGTTGCGGTACTCAGTCGAAGTGTTAGACGAGTGACACCTTCCCATGAGAAGGATTTAGCTGAGCCATTTGCACATTCATATAGAACATTGTATACCTTTAGAGAAATTAAAGGTTGCTGTTTGCAAACTGCTGTAGCTATACTCTTGTGTCTTGATGATCCGTATAATTGTAGTGATGTCAATTGGGACAGTAGTTCAGTGAAGATAGACATATAGCT 2304 0.4384 MGFDEYEYLEETVEKPEHKKEKEKEKETVNGGNGTVKSEERDRSRRHKVDVKDDDDVENRLKHSKSRDDSHDYEQLRESGTSHHRSRSRDTNKEKDQHRSSRDRRDRERDRDDRYGREGHKERDSNRERDRRDRGNDNERERERERSQRSRSRSERHRSDLDERDREQSHDRDYRDRERSREKDYKDKERERESREKDRENRRKEKKEEAAEPEADPERDQRTVFAYQISLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQPLRGQPVMVKPSEAEKNLVQSTTSVPTGPSGLIGPYSGGARRLYVGNLHFSITEVDLRRVFESFGQVELVQLPLDETGHCKGFGFVQFIRLEDARNAQSLNGQLEIGGRTIKVSAVTDQSGMSDAELGRNTGDLDDDEGGGLSLNASSRALLMQKLDRSGTASSVGGPFGNSVVNSTGLNPPAAPLLGAVPGVSQLVSPLPSVPTQAGLSSGGLLAPTSTAPTIPSFDTIGAPTECLLLKNMFDPKNEKEPDFDLDIKEDVEDECSRFGRIKHIYVDKNSAGLVYLRFENTQSAMNAQRALHGRWFAGKMITASFMVPQSYEDKFPESR 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach11g01409 614 Gene3D - 321 432 IPR012677 -
Bach11g01409 614 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 222 299 IPR000504 GO:0003723
Bach11g01409 614 Gene3D - 516 614 IPR012677 -
Bach11g01409 614 SUPERFAMILY RNA-binding domain, RBD 215 314 IPR035979 GO:0003676
Bach11g01409 614 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 127 613 IPR006509 GO:0003723|GO:0005634|GO:0006397
Bach11g01409 614 SMART rrm2_1 521 599 IPR003954 GO:0003676
Bach11g01409 614 SMART rrm2_1 327 399 IPR003954 GO:0003676
Bach11g01409 614 MobiDBLite consensus disorder prediction 1 221 - -
Bach11g01409 614 SUPERFAMILY RNA-binding domain, RBD 326 607 IPR035979 GO:0003676
Bach11g01409 614 FunFam Splicing factor, CC1-like protein 515 614 - -
Bach11g01409 614 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 326 403 IPR000504 GO:0003723
Bach11g01409 614 CDD RRM3_RBM39_like 519 601 - -
Bach11g01409 614 SMART rrm1_1 223 295 IPR000504 GO:0003723
Bach11g01409 614 SMART rrm1_1 327 399 IPR000504 GO:0003723
Bach11g01409 614 SMART rrm1_1 521 599 IPR000504 GO:0003723
Bach11g01409 614 Gene3D - 154 307 IPR012677 -
Bach11g01409 614 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 543 596 IPR000504 GO:0003723
Bach11g01409 614 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 232 292 IPR000504 GO:0003723
Bach11g01409 614 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 328 397 IPR000504 GO:0003723
Bach11g01409 614 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 520 603 IPR000504 GO:0003723
Bach11g01409 614 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 419 538 IPR029123 -
Bach11g01409 614 Coils Coil 185 210 - -
Bach11g01409 614 CDD RRM1_RBM39_like 223 295 - -
Bach11g01409 614 NCBIfam splicing factor, CC1-like family 105 611 IPR006509 GO:0003723|GO:0005634|GO:0006397
Bach11g01409 614 MobiDBLite consensus disorder prediction 8 221 - -
Bach11g01409 614 FunFam RNA-binding protein 39 isoform X1 215 307 - -
Bach11g01409 614 FunFam CC1-like, splicing factor 321 431 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach11g01409 Bach-Chr11 16362687 16371683 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach11g01409 223 389 Eukaryotic Initiation Factors Gene Family AT4G34110 28.994 3.22e-13 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach11g01409 K13091 - gmx:100789839 677.167