Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach11g01241 ATGAGTGAGAGGGGAAGTGGAAAGGTGAAGTGGTTCAATGACCAGAAGGGTTTTGGCTTCATAACCCCTGACGACGGCGGTGAGGATCTGTTTGTTCACCAGTCTTCCATCCGATCTGAAGGATTTAGGAGCCTCGGAGAAGGAGAAACTGTTGAATTTCTGATCGAGTCTGATGCAGACGGCCGAACCAAGGCTGTTGATGTAACTGGCCCTGAGGAATCGTCGGTTCAGGGAAGCCGCCGCGGTGGTGGCGGAGGCCCAGGCGGTGGAGGTGGTAATAGGGGAGGCGGCGGCTATGGTTCCGGTGGGGGAGGATATGGAGGTGGACGCGGAGGCGGCGGCTATGGTTCTGGTGGGGGAGGATATGGTGGTGGACGTGGCGGTGGGGGAGGATATGGTGGTGGTGGTGGTGGTGGCTGTTACAAGTGCGGTGAGGCGGGTCACTTGGCTAGGGATTGCTACCAAGGAGGCGGTGGTGGTGGTGGAGGTAGGTACGGAGGTGGCGGCGGCGGCGGCGGTGGAAGCTGCTTCAAATGTGGGGAGTCTGGGCATTTCGCAAGGGACTGCCCCAACAACGCTCGTTGA 585 0.5966 MSERGSGKVKWFNDQKGFGFITPDDGGEDLFVHQSSIRSEGFRSLGEGETVEFLIESDADGRTKAVDVTGPEESSVQGSRRGGGGGPGGGGGNRGGGGYGSGGGGYGGGRGGGGYGSGGGGYGGGRGGGGGYGGGGGGGCYKCGEAGHLARDCYQGGGGGGGGRYGGGGGGGGGSCFKCGESGHFARDCPNNAR 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach11g01241 194 MobiDBLite consensus disorder prediction 62 101 - -
Bach11g01241 194 SMART csp_8 6 71 IPR011129 GO:0003676
Bach11g01241 194 FunFam Cold shock protein 1 1 69 - -
Bach11g01241 194 SUPERFAMILY Retrovirus zinc finger-like domains 132 192 IPR036875 GO:0003676|GO:0008270
Bach11g01241 194 PRINTS Cold shock protein signature 28 37 IPR002059 GO:0003676
Bach11g01241 194 PRINTS Cold shock protein signature 7 22 IPR002059 GO:0003676
Bach11g01241 194 PRINTS Cold shock protein signature 43 61 IPR002059 GO:0003676
Bach11g01241 194 SUPERFAMILY Nucleic acid-binding proteins 3 70 IPR012340 -
Bach11g01241 194 Gene3D - 136 194 - -
Bach11g01241 194 ProSiteProfiles Zinc finger CCHC-type profile. 176 191 IPR001878 GO:0003676|GO:0008270
Bach11g01241 194 SMART c2hcfinal6 175 191 IPR001878 GO:0003676|GO:0008270
Bach11g01241 194 SMART c2hcfinal6 139 155 IPR001878 GO:0003676|GO:0008270
Bach11g01241 194 ProSiteProfiles Cold-shock (CSD) domain profile. 4 70 IPR002059 GO:0003676
Bach11g01241 194 Gene3D - 1 82 IPR012340 -
Bach11g01241 194 PANTHER COLD SHOCK DOMAIN PROTEIN 2 109 192 - -
Bach11g01241 194 ProSiteProfiles Zinc finger CCHC-type profile. 140 153 IPR001878 GO:0003676|GO:0008270
Bach11g01241 194 ProSitePatterns Cold-shock (CSD) domain signature. 18 37 IPR019844 -
Bach11g01241 194 Pfam 'Cold-shock' DNA-binding domain 6 70 IPR002059 GO:0003676
Bach11g01241 194 CDD CSP_CDS 7 70 IPR002059 GO:0003676
Bach11g01241 194 Pfam Zinc knuckle 175 191 IPR001878 GO:0003676|GO:0008270
Bach11g01241 194 Pfam Zinc knuckle 139 153 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach11g01241 Bach-Chr11 12776251 12776835 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Bach11g01241 CSD 9.1e-26 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach11g01241 - - cave:132187834 173.326