Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach11g01209 ATGGTGAAGGGAAAGTCTACCTCAGGTCGCCAAAAGATCCCTATTGAGAAAATACCAAAGAAGAGCCATCTGCAAGTTACATTCTCTAAGCGTCGTTTAGGGCTCTTCAAAAAAGCCAGTGAACTGTGTACCCTCTGCGGAGTTGAGATTGCAATTGTAGTCTTTTCTCCTGCTGAGAAGGCCTTCTCTTTTGGCCATCCCAATGTTGAATCCATCATTGATCGCTTTCTCACTCGAAACCCAGCACCTGATTCTGGTGCTCACCAGCTTGTTGAGGCTCACCGGAATGCTAATGTTCGTGATCTCAACATGCAGCTCACTCAGTTTCTGAATCAATTGGAAGTTGAGAAGAAGCGAGGTGAAGAGCTTGATCAAGCGAAGAAATTGAGACAGAGACAATTCTGGTGGGAGAGCCCTATTGATGAGCTGGGCTTGCAGGAGTTGCAGCTATTGAAGGTTTCAATGGAGGAGCTGAAGAAGAATGTAGCCAAACAGGCTAACAAAATCTTAATGGAGCATAACAGCGTGTCTTCACCAATTGTTGGGGCAAATGGAGTCAGATACTATGATGCCTTTGAGAAAAAACCTGAGATCAAGGCAATTTCATCTGCTCCTAATGCTTATAATCTCCATTTCAATCATGGGTACCTTTGA 654 0.4434 MVKGKSTSGRQKIPIEKIPKKSHLQVTFSKRRLGLFKKASELCTLCGVEIAIVVFSPAEKAFSFGHPNVESIIDRFLTRNPAPDSGAHQLVEAHRNANVRDLNMQLTQFLNQLEVEKKRGEELDQAKKLRQRQFWWESPIDELGLQELQLLKVSMEELKKNVAKQANKILMEHNSVSSPIVGANGVRYYDAFEKKPEIKAISSAPNAYNLHFNHGYL 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach11g01209 217 Coils Coil 99 119 - -
Bach11g01209 217 SUPERFAMILY SRF-like 9 81 IPR036879 GO:0003677|GO:0046983
Bach11g01209 217 Gene3D - 87 179 - -
Bach11g01209 217 Gene3D - 20 86 IPR036879 GO:0003677|GO:0046983
Bach11g01209 217 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Bach11g01209 217 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Bach11g01209 217 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Bach11g01209 217 Coils Coil 145 168 - -
Bach11g01209 217 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Bach11g01209 217 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Bach11g01209 217 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Bach11g01209 217 PANTHER MADS BOX PROTEIN 10 165 - -
Bach11g01209 217 FunFam Agamous-like MADS-box protein AGL62 20 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach11g01209 Bach-Chr11 11987931 11988584 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach11g01209 5 170 Type I MADS-box Gene Family AT5G60440 55.233 1.56e-57 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Bach11g01209 SRF-TF 1.6e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach11g01209 - - lja:Lj0g3v0067779.1 296.204