Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach11g01080 CCCCACCCCACCCCGAAGGTTCCTCGTCTCGCGGTCGCGGAAACCCTAAAACTAAAGCAGTAAAACCCCAAACATAAGCATGGAACTCTCGTCTCTGTTTCTTTCGAAACCCTAATTTCCTCCTTCATAAGCTTTTGCCCCCCAAATTCTCTCTCTAACTCCTTTTCCTTGTGATTGTGGGTTGAGTCATCCTTCGTTTCCGTCACGATCTCCAGGCCTACGCCAATAACTTTTCTTGCAGAATTTGATTCTGGTACATTGCGACTGCAATGAGTTCTGCCTTGGATATGTCACTTGATGATAGAATAAAGAACAGGAGTAACAAAGAGAGAGGTAGAGGAAATGGCAGGCCCCGTCGAGGCCGCCTACCAGGTGGGACTGGTAGTCGTGGAAGAATGCCTGGTGCAGCTCGAAGAGGTCCTCTTACAGTTAATACTCGGCGATCATCATATGCCATTGCTAAGTCAATTCGCAGACCCTGGTCTTTTCCATGGCAGCGTGACTTGTTTGAAGATAGCTTAAGAGCCGCAGGGATACAAGGAGTAGAAGTTGGCACAAAGTTGTATGTTTCCAACTTGGACCATGGAGTAACCAATGAAGACATCAGGGAACTTTTCTCTGAGATTGGAGACTTGAAGCGCTTTGCAGTTCATTATGACAAAAATGGACATCCGAGTGGTTCAGCTGAAGTTGTGTACACCAGAAGAAGTGATGCATTTGCAGCTCTCAAACGATACAATGATGTGCTCCTGGATGGAAGGCCCATGAAGATTGAGATTGTTGGTGCCAATGCTGATTTGCCTTTAACTGCTCGTGTGAATGTTTCTGGGGTAAATGGGCGGAGGAAGAGGACAGTTGTAATGACGTCTGGAGGAGGTCGAGGTGGGGGTCCTTTTATGGCTAATCACAGTATTGGTCAGGGACGCCGTGGTGGTGCAAGGGGCAGTATTGGAAGTAGCCGTGGGGATGTAAGGGGGAGTATTGGAAGTAACCGTGGCCGAGGCCGTGGCCGGGTACCCCGATCTAGGGGTCGAGGAGGCCGTGGTCGTGGGAAGAAGGGTCCTCTTGACAAGGGGGAACTTGACAAGGACCTGGAGACCTATCATGCCGAGGCCATGAATACCTCGTGATCTTCCAAGGACCATGACTGCTTTTCAATATTATTCTAGCCACGGGACCCTGTACAAAATGTTTGTTTCTGTGGCACTGCGCTATTTTGAATCTCTAGTCTGCACTCTCTGCTTAGAAATACCGGTGATATCGGATTTGGTCAAATTGAAATATTGTTAATGCCATAACATTAACTGGATGATTTTCAATTTATATCTTGGATCTTAGATTTTTCTTTACTATTTTCGTTTTCATATTATGTGTTGTAAATGGCAATTATCTTTGCTATGTTGAGTCTGGAGTGGTCGTAAGAAGTTCACCATGTTGACGCAGAGCCAACCAAATGTTGTCTAATGTAG 1469 0.4656 MSSALDMSLDDRIKNRSNKERGRGNGRPRRGRLPGGTGSRGRMPGAARRGPLTVNTRRSSYAIAKSIRRPWSFPWQRDLFEDSLRAAGIQGVEVGTKLYVSNLDHGVTNEDIRELFSEIGDLKRFAVHYDKNGHPSGSAEVVYTRRSDAFAALKRYNDVLLDGRPMKIEIVGANADLPLTARVNVSGVNGRRKRTVVMTSGGGRGGGPFMANHSIGQGRRGGARGSIGSSRGDVRGSIGSNRGRGRGRVPRSRGRGGRGRGKKGPLDKGELDKDLETYHAEAMNTS 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach11g01080 286 CDD RRM_THOC4 96 170 - -
Bach11g01080 286 MobiDBLite consensus disorder prediction 1 53 - -
Bach11g01080 286 Gene3D - 91 172 IPR012677 -
Bach11g01080 286 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 98 166 IPR000504 GO:0003723
Bach11g01080 286 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 5 283 - -
Bach11g01080 286 MobiDBLite consensus disorder prediction 260 279 - -
Bach11g01080 286 SMART FoP_duplication_2 217 286 IPR025715 -
Bach11g01080 286 MobiDBLite consensus disorder prediction 9 24 - -
Bach11g01080 286 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 96 173 IPR000504 GO:0003723
Bach11g01080 286 MobiDBLite consensus disorder prediction 197 286 - -
Bach11g01080 286 SMART rrm1_1 97 169 IPR000504 GO:0003723
Bach11g01080 286 SUPERFAMILY RNA-binding domain, RBD 21 170 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach11g01080 Bach-Chr11 9782499 9786468 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach11g01080 95 170 Eukaryotic Initiation Factors Gene Family AT2G23350 36.842 4.52e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach11g01080 K12881 - qsa:O6P43_020583 336.65