Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach11g00871 ATGAATGATCTCTTCTCAAGCTCCTTTAAAAAATACACTGACTTGAAGCAGCAGGCCTACCTGGATGATGTTGAGGCCGGAAAAGAGAGTGTCAACCTTGATAAATTCTTCGACGACGTGGAAAATGTAAAAGAAGACATGCGAGTTGTTGAGCAGCTTTACAGGAAGTTGCAGGAAGCCAATGAAGAAAGCAAAGTTGTACACAATGCTAAAACCATGAAAGACCTCAGAGCCCGGATGGATAAAGATGTGGAACAGGTCCTTAAACGTGTCAAAGTCATTAAGGGCAAGCTTGAAGCATTGGAGCGTTCTAATGCAGCTCAAAGAAATATTCCAGGTTGTGGTCCTGGTTCTTCAGCAGACAGAACAAGGACTTCAGTGGTCGGTGGCTTGGGCAAGAAACTCAAAAATATGATGGATGATTTCCAAGGTTTAAGAGCAAGAATACAGATGGAGTATAAGGAAACCGTGGAACGCAGATATTTCACAATAACAGGAGAGAAGGCAGATGAAGACACCATAGAGAATTTGATATCAAGTGGAGAAAGTGAAAGTTTCCTGCAGAGAGCAATTCAAGAACAAGGGAGGGGCCAGATTATGGACACCATCTCAGAAATCCAAGAAAGACATGATGCTGTTAAGGAAATAGAGCGGAACTTAATTGAGCTACATCAGGTATTTTTGGACATGGCTGCTCTTGTAGAGTCTCAAGGCCAACAGCTCAACAATATAGAAAGTCATGTTGCCCATGCCAGTTCTTTTGTGAGACGAGGCACAGAGCAGCTCCAGGAAGCTAGAGAGATTCAGAAGAGCTCGAGGAAGTGGATGTGCTATGCTGTGCTTCTTGGCACCATTCTCGTTATTGTGATCCTATTTCCTCTCTTTACATCAATTTTACCTCACTTGTTGTAG 912 0.4298 MNDLFSSSFKKYTDLKQQAYLDDVEAGKESVNLDKFFDDVENVKEDMRVVEQLYRKLQEANEESKVVHNAKTMKDLRARMDKDVEQVLKRVKVIKGKLEALERSNAAQRNIPGCGPGSSADRTRTSVVGGLGKKLKNMMDDFQGLRARIQMEYKETVERRYFTITGEKADEDTIENLISSGESESFLQRAIQEQGRGQIMDTISEIQERHDAVKEIERNLIELHQVFLDMAALVESQGQQLNNIESHVAHASSFVRRGTEQLQEAREIQKSSRKWMCYAVLLGTILVIVILFPLFTSILPHLL 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach11g00871 303 PANTHER SYNTAXIN 42 288 IPR045242 -
Bach11g00871 303 SMART SynN_4 28 154 IPR006011 GO:0016020
Bach11g00871 303 SMART tSNARE_6 198 265 IPR000727 -
Bach11g00871 303 Pfam SNARE domain 240 291 IPR000727 -
Bach11g00871 303 Coils Coil 40 70 - -
Bach11g00871 303 Coils Coil 84 104 - -
Bach11g00871 303 CDD SNARE_syntaxin1-like 202 264 - -
Bach11g00871 303 Gene3D - 33 160 - -
Bach11g00871 303 ProSitePatterns Syntaxin / epimorphin family signature. 209 248 IPR006012 GO:0005484|GO:0006886|GO:0016020
Bach11g00871 303 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 203 265 IPR000727 -
Bach11g00871 303 CDD SynN 33 190 IPR006011 GO:0016020
Bach11g00871 303 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 30 160 - -
Bach11g00871 303 FunFam Syntaxin 132 196 296 - -
Bach11g00871 303 SUPERFAMILY t-snare proteins 32 258 IPR010989 GO:0016020|GO:0016192
Bach11g00871 303 Gene3D - 194 295 - -
Bach11g00871 303 Pfam Syntaxin 35 238 IPR006011 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach11g00871 Bach-Chr11 7480385 7481296 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach11g00871 1 303 SNARE and Associated Proteins AT1G61290 76.898 2.08e-177 490
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach11g00871 K08486 - gmx:100818999 542.347
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bach11g00871 11 7480385 7481296 Bach7g00699 7 17858157 17859068 BWGD
Bach11g00871 11 7480385 7481296 Bach11g00871 11 7480385 7481296 ECH