LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bach11g00760	ATGACGAGAAGAAAGATACAGATCAAGAAGATCGACGACATAACTGCAAGGCAGGTGACTTTCTCTAAGAGGAGGAGAGGGCTTTTCAAGAAGGCACAGGAGCTGTCAACACTTTGTGATGCTGAGATTGCTCTATTGGTCTTTTCTAGTACTGGTAGGCTCTATGAGTATTCCAGTTCAAGCAGATTGAATGGAGAAGAGCTGCAAGGACTGACGTTTAAAGAACTGCAAAAGCTAGAAGATCTACTATGCACACGCCTGAACCGTGTTGTAAAAGCAAGGAATGAAAGAATTCAGAGAGATATCAGTGTCCTCAAGAAAAAGGGAGCCAAATTATTGGAAGTGAACAAGAAGTTGAAACAGCTTCAGAGGCATCATGAACAAGTCCAGCCATTTGACACCTCTCTCAAACTGGGGTTACCTATCCCCGACTAA	435	0.4322	MTRRKIQIKKIDDITARQVTFSKRRRGLFKKAQELSTLCDAEIALLVFSSTGRLYEYSSSSRLNGEELQGLTFKELQKLEDLLCTRLNRVVKARNERIQRDISVLKKKGAKLLEVNKKLKQLQRHHEQVQPFDTSLKLGLPIPD	144

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bach11g00760	144	Coils	Coil	105	125	-	-
	Bach11g00760	144	Pfam	K-box region	61	121	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Bach11g00760	144	SUPERFAMILY	SRF-like	2	63	IPR036879	GO:0003677\|GO:0046983
	Bach11g00760	144	Gene3D	-	14	78	IPR036879	GO:0003677\|GO:0046983
	Bach11g00760	144	ProSitePatterns	MADS-box domain signature.	3	57	IPR002100	GO:0003677\|GO:0046983
	Bach11g00760	144	PANTHER	SERUM RESPONSE FACTOR HOMOLOG	3	123	-	-
	Bach11g00760	144	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	10	57	IPR002100	GO:0003677\|GO:0046983
	Bach11g00760	144	CDD	MADS_MEF2_like	3	61	IPR033896	GO:0000977\|GO:0045944
	Bach11g00760	144	SMART	madsneu2	1	60	IPR002100	GO:0003677\|GO:0046983
	Bach11g00760	144	PRINTS	MADS domain signature	23	38	IPR002100	GO:0003677\|GO:0046983
	Bach11g00760	144	PRINTS	MADS domain signature	3	23	IPR002100	GO:0003677\|GO:0046983
	Bach11g00760	144	PRINTS	MADS domain signature	38	59	IPR002100	GO:0003677\|GO:0046983
	Bach11g00760	144	ProSiteProfiles	MADS-box domain profile.	1	61	IPR002100	GO:0003677\|GO:0046983

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bach11g00760	Bach-Chr11	6057430	6061437	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bach11g00760	1	121	MADS-box Gene Family	AT2G22540	44.379	1.85e-40	134

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-MIKC	Bach11g00760		K-box	2.4e-08	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bach11g00760	-		-	qsu:111999341	149.828