Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach11g00740 ATGTCTGATCTTGAAGCTTCCCGCTCAGAGAAGAAGAAGAAGAAGCACCGCAGCAAAGATGAAAACCAAGATACTCCCGCCAATACTATTGCGCTTGCAGGCTTCGACCCTACTCAGAAGGACTCCGATTTTATGATCAAACCGCAGAGTTTCACCCCACCAATTGACACCTCTCAATGGCCGATTCTCCTCAAGAACTATGACCGCCTCAACGTACGAACCGGACACTACACTCCAATCCCCGCTGGTTACTCTCCCCTGAAGCGCCCTCTCCCAGAGTACATCAAATACGGTGTTATGAATCTCGATAAACCCGCAAACCCTTCTTCTCATGAGGTTGTAGCTTGGATTAAACGAATCCTCCGGGTCGAGAAAACAGGTCATAGTGGTACTCTGGATCCGAAAGTCACCGGCAACCTTATTGTTTGCATTGACAGGGCGACCCGGTTAGTGAAATCGCAACAGGGTGCTGGAAAAGAGTATGTCTGTGTTGCCCGCTTGCACTCTGCTGTTCCGGATGTTGCAAAGGTGGCGCGTGCGCTTGAAACGCTAACTGGGGCTGTGTTTCAGAGGCCACCATTGATTTCTGCGGTGAAGAGGCAGCTCAGAATCAGGACTATATATGAAAGTAAGCTTCTTGAGTATGACCCAGATAGGCATTTAGTTGTGTTTTGGATTTCTTGTGAAGCAGGTACCTATGTTAGGACTTTGTGTGTTCATTTGGGTTTAATTCTGGGTGTGGGAGGGCATATGCAGGAGCTTAGGAGGGTACGCTCTGGTATTTCGGGTGAGAAAGATAACATGGTTACAATGCATGATGTGATGGATGCTCAATGGGTTTATGACAATTATAGGGATGAGAGTTATTTGAGGAGGGTTATTATGCCATTAGAAGTGATTTTGACAAGTTATAAGAGATTGGTTGTGAAGGATTCATCTGTGAATGCTATTTGCTATGGAGCTAAGCTTATGATTCCTGGGTTGTTGAGGTTTGAGAATGACATTGAAGTTGGGGAGGAAGTTGTGCTTATGACTACCAAAGGTGAGGCAATTGCATTGGGGATTGCTGAGATGACTACTGCAGTTATGGCGACTTGTGATCATGGTGTGGTGGCTAAGATTAAAAGGGTGGTAATGGATCGAGATACGTATCCAAGGAAATGGGGCTTAGGTCCAAGGGCTTCCATGAAGAAGAAGCTGATTGGAGAAGGGAAGCTTGATAAGCATGGCAAGCCAAATGAGAATACTCCTCAAGAGTGGCTGAGGAATGTAGTTTTACCCACTGGTGGAGATAAAATGATTGCAGGAATGGCTGCTGCACTAGAAACGGATGCAGTGAATAAGGAGGCCGTTGTAGAAGAGAAGCAAAAGACTAAGAAGGAGGAAGATGGGGAGGGGCGTAAAAGGAAGAAGGTTGAAAGCAGTGATAGCCCTGCAGCTCTTCCTGCTAAGAAGGTCAGAGTTGAAGAGGTTGAGAGGGAAGAAAGGATGAAGGTTAAGAAGGGAAAAGAAGAGGCTGTAGAGTTTGAAGTTGAGAAGGAAGAGAAGAAGAAGAAGAAGAAGAAAAAGGATAAAGAGAACGAAGTAGCATCTTCGGACGAGGAAAAAACAGAAAAGAAGAAGAAGCACAAGGAAAAAGAAAAGGTTGAAGTTGGTTCGCCTGATGTTGAGAAGTCTGAGAAGAAGAAAAAGAAGAAGGACAAAGAGGCAGAAACCAATGGTACTGAGATCACTACTGAAAAGGAGAATGGTGATGCTGATAGGAGTGAGAAGAAAAAACATAAGAAGAAAAGTAAAGATGTTGAGGAAAATATCTGA 1818 0.4483 MSDLEASRSEKKKKKHRSKDENQDTPANTIALAGFDPTQKDSDFMIKPQSFTPPIDTSQWPILLKNYDRLNVRTGHYTPIPAGYSPLKRPLPEYIKYGVMNLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVAKVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDPDRHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSGISGEKDNMVTMHDVMDAQWVYDNYRDESYLRRVIMPLEVILTSYKRLVVKDSSVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLRNVVLPTGGDKMIAGMAAALETDAVNKEAVVEEKQKTKKEEDGEGRKRKKVESSDSPAALPAKKVRVEEVEREERMKVKKGKEEAVEFEVEKEEKKKKKKKKDKENEVASSDEEKTEKKKKHKEKEKVEVGSPDVEKSEKKKKKKDKEAETNGTEITTEKENGDADRSEKKKHKKKSKDVEENI 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach11g00740 605 CDD PseudoU_synth_hDyskerin 96 278 - -
Bach11g00740 605 MobiDBLite consensus disorder prediction 451 605 - -
Bach11g00740 605 CDD PUA_Cbf5 303 377 - -
Bach11g00740 605 SMART DKCLD_2 56 114 IPR012960 -
Bach11g00740 605 NCBIfam RNA-guided pseudouridylation complex pseudouridine synthase subunit Cbf5 64 389 IPR004802 GO:0006396
Bach11g00740 605 MobiDBLite consensus disorder prediction 483 605 - -
Bach11g00740 605 Coils Coil 499 542 - -
Bach11g00740 605 Gene3D PUA domain 57 388 IPR036974 GO:0003723
Bach11g00740 605 Pfam TruB family pseudouridylate synthase (N terminal domain) 118 234 IPR002501 GO:0006396
Bach11g00740 605 SMART pua_5 305 379 IPR002478 GO:0003723
Bach11g00740 605 NCBIfam uncharacterized domain 2 300 376 IPR004521 GO:0003723
Bach11g00740 605 SUPERFAMILY PUA domain-like 304 385 IPR015947 -
Bach11g00740 605 Gene3D Pseudouridine synthase 90 296 - -
Bach11g00740 605 PANTHER CENTROMERE/MICROTUBULE BINDING PROTEIN CBF5 10 548 IPR004802 GO:0006396
Bach11g00740 605 Pfam tRNA pseudouridylate synthase B C-terminal domain 235 301 IPR032819 -
Bach11g00740 605 Pfam DKCLD (NUC011) domain 57 114 IPR012960 -
Bach11g00740 605 FunFam H/ACA ribonucleoprotein complex subunit CBF5 90 296 - -
Bach11g00740 605 SUPERFAMILY Pseudouridine synthase 57 302 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Bach11g00740 605 MobiDBLite consensus disorder prediction 451 475 - -
Bach11g00740 605 MobiDBLite consensus disorder prediction 1 23 - -
Bach11g00740 605 ProSiteProfiles PUA domain profile. 304 379 - -
Bach11g00740 605 MobiDBLite consensus disorder prediction 1 35 - -
Bach11g00740 605 Pfam PUA domain 305 377 IPR002478 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach11g00740 Bach-Chr11 5729334 5731151 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach11g00740 1 485 NAC Transcription Factor Family AT3G57150 81.031 0.0 752
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach11g00740 K11131 - qsa:O6P43_026550 841.262