Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach11g00670 ATGAGTTCCTACCTTACAGACTCTCTGCTAGGTTATCTTCCTACGCTACAGAAACCCGCACTCTTTCAGCGATCAATTCCTCGCATCACTGTTGAGATGTCAGAATTGGAAGAATATCGTTGCTTTATTGGTGGACTTTCATGGTCAACATCTGATAGAAAGTTAAGAGATGCATTTGAGAAGTTTGGTAAGCTTGTTGAAGCAAAGGTGGTTGTTGACAAATTCTCTGGGCGTTCTCGTGGTTTTGGATTTGTCACATTTGATGAAGAGAAAGCAATGGAAGATGCTATTGATGCTATGAATGGTATGGATTTAGATGGTCGAAGTATTACTGTTGATAAAGCTCAGCCTCAACAAGGATCAAGTAGAGATGATGGCGATCGCTTCCGAGATCGTGGTCGTGATCGCGATCGTAACAGAAATTTTGGAGGTGGTCGAGGGTCTAACGGTGGGGAATGCTTTAAGTGTGGTAAACCTGGCCATTTTGCTCGGGAGTGTCCTAGCGATGGTGGAAGAGGGGGTAAGTACGGTGGCAGGGACGGTGGTAGGGAAAGTAGATATGGTGGCAGCGGAGGTGGTAGTCACTATGGTCCTGATAGGAACGCAGAACGTCCCTCTGGTGGACGTAACAGAGATTCTGGTAGTCATGGAGATTCAGGGGGTGATCGATATTATCGTGACCGTGCTGGACCCTATGACCGACGGGGATCAGGAGGCTTTCGTTCTGGGTAGTATTTAATCATTTCATTGAGCTTCGGAACTGGTGGTGTCGCTGTTACTGCCTCAGCTGTCATGCTCAATGACCATGTTCTGGAATTGTTGTTTGGATGGATCAATGAAGTAAACCAGTGTTTTGATGTGCAATACTTGGCACATATATCAAACTTTTTTATGTTCCTAAAAATGCTGATCATTTGGTCTGTTGAAATCTTAAGTCAAATTTGA 945 0.4466 MSSYLTDSLLGYLPTLQKPALFQRSIPRITVEMSELEEYRCFIGGLSWSTSDRKLRDAFEKFGKLVEAKVVVDKFSGRSRGFGFVTFDEEKAMEDAIDAMNGMDLDGRSITVDKAQPQQGSSRDDGDRFRDRGRDRDRNRNFGGGRGSNGGECFKCGKPGHFARECPSDGGRGGKYGGRDGGRESRYGGSGGGSHYGPDRNAERPSGGRNRDSGSHGDSGGDRYYRDRAGPYDRRGSGGFRSG 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach11g00670 243 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 39 117 IPR000504 GO:0003723
Bach11g00670 243 SUPERFAMILY Retrovirus zinc finger-like domains 135 173 IPR036875 GO:0003676|GO:0008270
Bach11g00670 243 CDD RRM2_NsCP33_like 40 115 - -
Bach11g00670 243 Gene3D - 30 148 IPR012677 -
Bach11g00670 243 Pfam Zinc knuckle 152 168 IPR001878 GO:0003676|GO:0008270
Bach11g00670 243 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 33 239 - -
Bach11g00670 243 ProSiteProfiles Zinc finger CCHC-type profile. 153 168 IPR001878 GO:0003676|GO:0008270
Bach11g00670 243 SMART c2hcfinal6 152 168 IPR001878 GO:0003676|GO:0008270
Bach11g00670 243 MobiDBLite consensus disorder prediction 202 234 - -
Bach11g00670 243 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 42 110 IPR000504 GO:0003723
Bach11g00670 243 SMART rrm1_1 40 113 IPR000504 GO:0003723
Bach11g00670 243 Gene3D - 149 211 - -
Bach11g00670 243 MobiDBLite consensus disorder prediction 120 142 - -
Bach11g00670 243 MobiDBLite consensus disorder prediction 111 243 - -
Bach11g00670 243 FunFam Glycine-rich RNA-binding protein RZ1A 33 148 - -
Bach11g00670 243 SUPERFAMILY RNA-binding domain, RBD 21 147 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach11g00670 Bach-Chr11 5098953 5101615 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach11g00670 41 149 Eukaryotic Initiation Factors Gene Family AT1G71770 33.028 5.76e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach11g00670 - - gmx:100815224 265.003