Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach11g00501 TGTCTTCTCCCAGATCTTAGATTCTATCAATTTCCCATCTGGGTTGTCTTCATTTGAATGGGAATGGACCCTGGCAAACTGTTCATTGGTGGGATTTCCTGGGACACAAATGAAGACCGACTCAGACAGTATTTCCAGAATTTTGGAGATGTGGTTGAGGCTGTGATAATGAAGGATCGCACCACAGGGCGTGCCCGTGGTTTTGGATTTGTTGTTTTTGCCGATCCTTCTGTTGCTGAACGAGTTGCTATGGAAAAACACGTCATTGATGGTAGAAGTGTGGAAGCAAAAAAGGCTGTTCCTAAAGATGATCAGAACATTCTGAACAGATGCAATGGCAGCAGCACTCACGGGTCACCAGGACCTAGCCGCACAAAGAAGATATTTGTTGGAGGCCTAGCATCCACAGTCACTGAGTGCGACTTTAAGAAGTATTTTGATCAATTTGGAGTAATCACAGATGTTGTTGTGATGTATGATCATAACACCCAGAGGCCAAGAGGTTTTGGGTTCATCACCTATGATTCTGAGGATGCAGTGGAGAAAGTTCTGTACAAAACTTTTCATGAACTGAATGGTAAAATGGTTGAGGTGAAGCGGGCTGTTCCAAAGGAATTATCTCCAGGTTCTAGTAGAGGCCAGTTAGTTGGATATAACTATGGTTTAAATAGAGTTAATAGCTTTTCTAATGGTTCTATTCAGGGCTATAATCCAAGCCTGGTTGGTGGGCTTGGACTTGGGACGGATGGCAGATTTAGTCCTATTAGTCCAATTACTGTCGGTCGGAGTGGATATCCTCCTTTTAGTCCTAGTTATGGAACAGGGCTCAACTATGAGCCTACGTTGAGTCAAAATGGGAATGCAAACTTCACTCCTTCCCTCACCTTTGGGCGGGCACTGAGTCCTACTTATACTGGAAATTCAAGCAGGTATTCTAACGCCATTGGATATGCTGGTACAAGTGGAGGCAACAGTTCAACCATGAGTTCTCCAAGTCAGAGTTTTTGGGGTAATGGGAGTCTTAACTATGCTCCTAACTCTGCATACTCTGATTCTTTTGTTGGGTATGGACGTGAAAATTCAAATATGGGTTCTTTTGGTAGTATTGAAGCACTTTGGGGTTCCTCACCTAGCATGGATCAAGCTGGATCAATTGGCTCCGGCTATGGCAAGGGCGGTCTTAGTTATGGCACTGGCAATGTGATTTTTGGTTCAAGAGCTGTAGGTTACGGAAGAAGTAGTGAAAACCTTCCTGCATCATCTTCATCATATGCTCTATCAAATGGAAGTTATGATGGGGCATATAAAGACACTTACAAAGCTGGGTCATTTTATGACCAAACTTGGAGATCACCACCTTCAGAATTAGAGGATTCTGGTTCCCTTGGTTATGGCTTTGGAAATGCTGTTTCAGATTTGATGAGTAAAAATTCTGGTAGCCACATTGGGGCTTATACTGTTGCCAATAGACAAGCAAATAGAGGAATTGCTGCCTAGGAAGATTATTCCATGGATGCTTAGATGTTATGCTGAAGTATATGGTGCAGAAAGTGACTGAAAGTGGAAAGCATAAATTTCCTTTGTTTGAGATACTTTAGTTGTTCTAAAACATCGTTAGAGCTAATCGGTTTGCCTGTTTTGAAGAACTTACAAACACAGAGCACTTATCAAGAGATTTCCTTCTCAAGGGCTGAGATTGAGTGAAATATATAGGTTTTCTTTCTTGAGATTTTGGGATGTAAAATCTATCAGAAATGCCATATAATGCATGTCCGTTGACAGAGCAACACAT 1792 0.4208 MGMDPGKLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVAMEKHVIDGRSVEAKKAVPKDDQNILNRCNGSSTHGSPGPSRTKKIFVGGLASTVTECDFKKYFDQFGVITDVVVMYDHNTQRPRGFGFITYDSEDAVEKVLYKTFHELNGKMVEVKRAVPKELSPGSSRGQLVGYNYGLNRVNSFSNGSIQGYNPSLVGGLGLGTDGRFSPISPITVGRSGYPPFSPSYGTGLNYEPTLSQNGNANFTPSLTFGRALSPTYTGNSSRYSNAIGYAGTSGGNSSTMSSPSQSFWGNGSLNYAPNSAYSDSFVGYGRENSNMGSFGSIEALWGSSPSMDQAGSIGSGYGKGGLSYGTGNVIFGSRAVGYGRSSENLPASSSSYALSNGSYDGAYKDTYKAGSFYDQTWRSPPSELEDSGSLGYGFGNAVSDLMSKNSGSHIGAYTVANRQANRGIAA 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach11g00501 479 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 3 475 - -
Bach11g00501 479 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Bach11g00501 479 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Bach11g00501 479 CDD RRM2_Hrp1p 108 185 - -
Bach11g00501 479 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 107 184 IPR000504 GO:0003723
Bach11g00501 479 SUPERFAMILY RNA-binding domain, RBD 4 103 IPR035979 GO:0003676
Bach11g00501 479 MobiDBLite consensus disorder prediction 88 103 - -
Bach11g00501 479 Gene3D - 5 88 IPR012677 -
Bach11g00501 479 FunFam Heterogeneous nuclear ribonucleoprotein 1 5 87 - -
Bach11g00501 479 FunFam Heterogeneous nuclear ribonucleoprotein 1 104 191 - -
Bach11g00501 479 SUPERFAMILY RNA-binding domain, RBD 102 201 IPR035979 GO:0003676
Bach11g00501 479 MobiDBLite consensus disorder prediction 87 106 - -
Bach11g00501 479 SMART rrm1_1 108 180 IPR000504 GO:0003723
Bach11g00501 479 SMART rrm1_1 7 78 IPR000504 GO:0003723
Bach11g00501 479 Gene3D - 104 194 IPR012677 -
Bach11g00501 479 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 109 167 IPR000504 GO:0003723
Bach11g00501 479 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 64 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach11g00501 Bach-Chr11 3566593 3570405 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach11g00501 8 219 Eukaryotic Initiation Factors Gene Family AT2G36660 30.317 2.82e-16 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach11g00501 K14411 - cave:132171089 661.373