Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach11g00455 ATGGAGGGTTGTAGTTCTAACGGCACTTCTTGTGTTATGGGTTTTGGAGAGAATAATAGTGGGATATGTCCAATGATAATGCCTTTAGTGACTTCTCATCATGGTGGTCATCATCCAATAAATCCTAATCTCAGTAATCCTAATGCTGACCCAAACAGTCTCTTCCTTCCTATGCTTTGCACTAACCATCACAACTCAAACCACAATAACACTGGCAGCTCCTCGCTCATGCTTGACAATAACCACAACAACAGCAACACTGGGTTAGGGTGTTATTTCATGGAGAGCGACCACAGCAACAACGATGGTAGCTCCTCTTCTGTTAAGGCCAAGATCATGGCTCATCCTCAGTACCACCGTCTCTTGGCTGCCTACGTCAATTGTCAAAAGATTGGAGCCCCCCCTGAAGTGGTGGCGAAGATAGAAGCAGCATGTGCTTCTGCAGTGACAATGGCAGGTGATGCAGCTGGCTCAGCCTGCGTAGGTGAAGATCCAGCCCTGGATCAGTTCATGGAGGCTTATTGTGAGATGCTGACCAAGTACGAGCAAGAGCTTTCAAAGCCCTTCAAGGAAGCTATGCTGTTCCTTCAAAGGATTGAGTGTCAGTTTAAAGCTCTCACAATTTCGTCTTCAGACATCGGATCAGCTCGTAACGAATGTGCTGATAGGAATGGATCATCTGAAGAAGACGTGGATGTACATAACATGATAGATCCTCAGGCTGAGGATCGAGAATTGAAGGGTCAGCTTCTGCGCAGGTACAGCGGATACTTGAGCAGTCTTAAGCAGGAATTCATGAAGAAGAGGAAGAAAGGGAAGCTGCCTAAAGAAGCAAGGCAACAGTTACTTGATTGGTGGAGCAGACATTATAAATGGCCTTACCCATCTGAATCGCAGAAGCTTGCCCTTGCAGAATCAACAGGTCTGGATCAGAAGCAAATAAACAACTGGTTTATTAACCAAAGGAAGAGGCACTGGAAGCCTTCCGAGGACATGCAGTTTGTGGTGATGGATGCCACACATCCCCATTATTACATGGATAATGTTTTGGGCAATCCCTTTCCCATGGATCTCTCTCATACAATGCTCTGA 1092 0.4597 MEGCSSNGTSCVMGFGENNSGICPMIMPLVTSHHGGHHPINPNLSNPNADPNSLFLPMLCTNHHNSNHNNTGSSSLMLDNNHNNSNTGLGCYFMESDHSNNDGSSSSVKAKIMAHPQYHRLLAAYVNCQKIGAPPEVVAKIEAACASAVTMAGDAAGSACVGEDPALDQFMEAYCEMLTKYEQELSKPFKEAMLFLQRIECQFKALTISSSDIGSARNECADRNGSSEEDVDVHNMIDPQAEDRELKGQLLRRYSGYLSSLKQEFMKKRKKGKLPKEARQQLLDWWSRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDATHPHYYMDNVLGNPFPMDLSHTML 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach11g00455 363 Pfam Homeobox KN domain 285 324 IPR008422 GO:0003677|GO:0006355
Bach11g00455 363 Pfam ELK domain 245 266 IPR005539 GO:0003677
Bach11g00455 363 SUPERFAMILY Homeodomain-like 267 342 IPR009057 -
Bach11g00455 363 SMART HOX_1 267 332 IPR001356 GO:0003677
Bach11g00455 363 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 76 334 - -
Bach11g00455 363 Pfam KNOX2 domain 160 207 IPR005541 GO:0003677|GO:0005634
Bach11g00455 363 ProSiteProfiles 'Homeobox' domain profile. 265 328 IPR001356 GO:0003677
Bach11g00455 363 Gene3D - 270 332 - -
Bach11g00455 363 SMART KNOX2_2 157 208 IPR005541 GO:0003677|GO:0005634
Bach11g00455 363 SMART KNOX1_2 106 150 IPR005540 GO:0003677|GO:0005634
Bach11g00455 363 Pfam KNOX1 domain 108 146 IPR005540 GO:0003677|GO:0005634
Bach11g00455 363 ProSiteProfiles ELK domain profile. 245 265 IPR005539 GO:0003677
Bach11g00455 363 CDD homeodomain 277 329 IPR001356 GO:0003677
Bach11g00455 363 FunFam Homeobox protein knotted-1-like 2 270 332 - -
Bach11g00455 363 ProSitePatterns 'Homeobox' domain signature. 303 326 IPR017970 GO:0000981|GO:0006355
Bach11g00455 363 SMART ELK_2 245 266 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach11g00455 Bach-Chr11 3158189 3161753 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach11g00455 108 363 Homeobox Transcription Factor Family AT1G62360 81.298 2.38e-137 394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Bach11g00455 KNOX2 1.8e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach11g00455 - - gmx:547796 570.081