Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach11g00352 ATGGCCCAATTTTCAGGAACCACTCAGAAATGCATGGCATGTGACAAGACCGTATACCTCGTCGAAAAGATAACTGCAGATGGCCGTATCTTTCACAAGAACTGCTTCCGATGCCACCATTGCCGCAGTACCCTCAAGCTTAGCAACTATTGTTCTTTTGATGGCGTGCTCTACTGCAGACCACACTATGATCAAACCTTCAAGCGAACTGGTAGCCTGGAAAGGAGTTTCGAAGGAACACCCAAAATTCAGAAACCAGAAAGACCGGCCGAAAATGAGAATGCTAAGGTACTCTCAAACGTGTTCTTGGGCACCAAGGACAAATGTGCGGGCTGCTCCAAGACAGTTTATATTACTGAAAGGGTTTCAATTAATGGAACTCCCTACCACAAGGGCTGCTTCAAGTGTACCCATGGTGGTTGTACCATAAGCTCATCAACCTTTGTTACACATGAAGGAAAGCTATATTGCAAGCACCATCACATTCAACTCTTTAAAGAGAAAGGGAACTACAGCCAGCTTGATTGCGATAAGAATTCTCTGACTGAGAAAATCACTACCTTGGAAATTGCCGCTGAATCATGA 585 0.4462 MAQFSGTTQKCMACDKTVYLVEKITADGRIFHKNCFRCHHCRSTLKLSNYCSFDGVLYCRPHYDQTFKRTGSLERSFEGTPKIQKPERPAENENAKVLSNVFLGTKDKCAGCSKTVYITERVSINGTPYHKGCFKCTHGGCTISSSTFVTHEGKLYCKHHHIQLFKEKGNYSQLDCDKNSLTEKITTLEIAAES 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach11g00352 194 Pfam LIM domain 11 66 IPR001781 -
Bach11g00352 194 Pfam LIM domain 109 164 IPR001781 -
Bach11g00352 194 ProSitePatterns LIM zinc-binding domain signature. 11 45 IPR001781 -
Bach11g00352 194 ProSiteProfiles LIM domain profile. 9 69 IPR001781 -
Bach11g00352 194 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 36 - -
Bach11g00352 194 Gene3D Cysteine Rich Protein 5 75 - -
Bach11g00352 194 Gene3D Cysteine Rich Protein 104 173 - -
Bach11g00352 194 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 37 77 - -
Bach11g00352 194 FunFam LIM domain and actin-binding 1 5 75 - -
Bach11g00352 194 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 135 173 - -
Bach11g00352 194 ProSiteProfiles LIM domain profile. 107 167 IPR001781 -
Bach11g00352 194 FunFam LIM domain and actin-binding 1 103 173 - -
Bach11g00352 194 PANTHER OS06G0237300 PROTEIN 2 94 - -
Bach11g00352 194 SMART lim_4 10 62 IPR001781 -
Bach11g00352 194 SMART lim_4 108 160 IPR001781 -
Bach11g00352 194 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 101 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach11g00352 Bach-Chr11 2339182 2340290 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Bach11g00352 LIM 9e-12 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach11g00352 K09377 - cave:132177345 328.176