LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bach11g00281	CTCCACCGAAGATCCATTCTTCATCGACTCGGTCCCTAAGCCGCCAAGTCACCGCCGGTCGCCGGCCGGTTGTGTTCTTCAGGGCCCCCAGCTATGGAGATCGCTGATGAGGTGCCTCTTCTTCGCGATGATAACTCAAACCCCACCGTCTCCACCGATAGCGTCGTGAACTCTTCTTCTTCTTCGTCGTCGTCGTCGCCTCGTGGTTCGAAGGAAAAGGAGAACGAAGGCAACGTGTCCACATCCCCCAAATACGACGATGAAGATGAGGAGGAAGAGGACGTCTGTCGGATATGTCGAAACCCTGATGATGCCGAGAATCCTCTCAGGTATCCTTGCGCATGTAGCGGGAGCATCAAGTTTGTGCATCAGGATTGTCTGCTTCAATGGCTTAATCACAGCAACGCTCGCCAATGCGAGGTCTGCAAACATGCATTTTCTTTCTCTCCTGTTTATGCTGAGAATGCACCAGCAAGGTTACCTTTCCAGGAGTTTGTAGTTGGGATGGGAATGAAGGCTTGCCATGTTCTGCAGTTCTTCTTGCGCCTGAGTTTTGTACTCTCTGTCTGGCTCCTTATTATACCTTTCATCACATTTTGGATATGGCGGTTGGCTTTTGTGAGGACCTTTGGTGAAGCCCAAAGGTTATTTTTAAGTCATTTATCTACTGCTGTTATTCTGACTGACTGCCTGCATGGGTTCCTACTTTCTGCGAGCATTGTCTTCATTTTCCTCGGAGCCACTTCTTTGAGGGATTACTTTAGGCATTTACGAGAAATTGGAGGACATGAAGCTGATAGAGAAGACGAAATGGACAGAAATGGTGTTCGTATTGCTAGAAGACCTCCTGGACAGGCTAACCGGAATATTGCTGGTGATGGAAATGGGGAAGATGCTGGTGGGGCACAAGCCATTGCTGGAGCTGGTCAAGTAATCAGAAGGAATGCAGAAAATGTTGCTGCTCGGTGGGAGATGCAAGCAGCTCGTCTTGAGGCTCATGTTGAGCAAATGTTTGATGGTCTGGATGATGCTGATGGTGCAGAGGATGTACCGTTTGATGAGCTTGTTGGCATGCAGGGTCCTGTTTTTCATTTGGTTGAAAATGCATTTACGGTTCTGGCAAGCAATATGATTTTCCTTGGTGTGGTAATCTTTGTTCCCTTTTCACTGGGTCGTGTCATACTCCATTATCTATCTTGGTTCTTTTCAACTGCTAGTGGTCCTGTATTGTCTACTGTCATCCCATTGACAGACACAACTCTTTCGCTAGCAAATATTACCTTAAAAAATGCTTTAACTGCTGTTAGAAATTTGTCATCTGATGCTCAAGAAGGTGGCATGATTAGTGAGGTTGCAGAAATGCTGAAAGTGAATGGAAGCGGATTGAGTGAAATGTCAAGTAATGTTAGTGCAGCTGTATCAGTTGAAGTCTTGAAAAGAGGGTCAATTGTAACATCAAGGCTTTCTGATGTTACCACACTTGCCATTGGATATATGTTCATATTCACTCTGGTATTTTGCTACTTTGGCATTGTGGCTTTGATTCGTTACACAAGGGGTGAACCTTTGACCATGGGAAGATTCTATGGTATTGCTTCTATCGCAGAGACAATTCCCTCTCTCTTCAGGCAGTTTTTTGCAGCAATGAGGCATTTGATGACCATGGTTAAAGTTGCTTTCCTACTAGTTATTGAACTGGGGGTTTTCCCTTTGATGTGTGGGTGGTGGCTAGATGTTTGTACCATACGGATGTTTGGGAAGACAATGGCTCACAGAGTTCAGTTCTTCTCTGCTTCTCCTTTAGCAAGCTCATTGGTTCATTGGGTTGTAGGGATTGTGTACATGCTACAAATTAGCATATTTGTCAGCCTCCTTAGAGGGGTTTTGCGTAATGGAGTTTTGTATTTCCTTCGAGATCCAGCTGATCCAAACTACAATCCATTCCGGGATCTGATTGATGATCCTGTGCACAAACATGCTCGTAGGGTTTTGTTATCTGTTGCTGTTTATGGAAGTTTAATTGTGATGTTGGTATTCTTACCTGTCAAGCTTGCTATGCGAATGGCTCCTTCCATTTTTCCACTTGATATATCGGTATCTGATCCATTCACAGAAATTCCAGCTGACATGCTTCTTTTTCAGATCTGCATCCCATTTGCAATTGAGCATTTTAAATTGAGGACAACTATTAAATCGCTACTGCGCTATTGGTTTACAGCAGTTGGCTGGGCACTTGGTTTAACCGATTTCTTACTGCCCAGACCTGATGATAACAGTGGTCAGGAAAATGGTAATGCGGAGCCAGGCAGGCAGGATCGGCTACAGGTAGTACAAGCAGCAGTACATGATCAGGCCATGGTGGCATTTGCAGGCAATGAAGTGAATAGAGGCATTCTTGCTCCGGGAGACTTGAATGCCAGAGAGGATTATGATAGTGATGAACAATCTGATTCTGATTATGGTTTCGTACTTCGTATTGTTCTGTTGCTGGTAGTTGCTTGGATGACTCTCCTTATCTTTAATTCTGCCCTAATAGTTGTACCAATTTCATTTGGACGAGCACTTTTCAATTCCATTCCCCTTCTGCCCATAACTCATGGCATTAAGTGCAATGATTTATATGCTTTCTTCATTGGAAGTTATGTGATTTGGACGGCTGTTGCTGGAGTCAGATACTCAATTGAGCAAATTAGGAAGAGGAGGGCTTCAGTTTTATTGGGCCAAATCTGGAAGTGGTGTGCCATTGTTTTTAAGAGTTCTGCACTTCTGTCAATATGGATATTTGTTATCCCTGTGTTAATTGGGCTCCTCTTTGAGCTATTGGTTATTGTGCCCATGAGAGTTCCAGTGGATGAAAGTCCAGTCTTCCTCCTTTATCAAGACTGGGCGCTAGGTCTTATTTTTCTCAAGATATGGACTAGATTGGTTATGTTGGATCACATGATGCCACTTGTAGATGACAGTTGGCGAGTAAAATTTGAGAGGGTGAGAGAGGATGGTTTCTCCAGGTTACAAGGTCTTTGGGTTCTACGGGAGATTGTGCTTCCAATCATAATGAAATTGTTAACAGCATTGTGTGTGCCTTACGTTTTAGCCAGAGGAGTGTTTCCAGTGCTTGGGTACCCGTTGGTTGTCAATTCTGCCGTCTATCGATTTGCCTGGTTGGGATGCCTGTGTTTAAGCTTTTTATGCTTTTGTGCTAAGAGATTCCATGTCTGGTTCACAAACCTCCATAATTCAATACGTGATGACCGATATCTGATTGGCCGGAGGTTGCATAACTTTGGGGAGGATGTTCTGAAGAAGACAAATGAAGGAAATTCCAGTGTGTTGCAGAATAATAGTTTACAAGGGACCAGTTTGATTCAACATGACCACGATGCTGATATTGGACTGCGGCTGAGGCATGTCAATCGACAGTGA	3423	0.4426	MEIADEVPLLRDDNSNPTVSTDSVVNSSSSSSSSSPRGSKEKENEGNVSTSPKYDDEDEEEEDVCRICRNPDDAENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFSPVYAENAPARLPFQEFVVGMGMKACHVLQFFLRLSFVLSVWLLIIPFITFWIWRLAFVRTFGEAQRLFLSHLSTAVILTDCLHGFLLSASIVFIFLGATSLRDYFRHLREIGGHEADREDEMDRNGVRIARRPPGQANRNIAGDGNGEDAGGAQAIAGAGQVIRRNAENVAARWEMQAARLEAHVEQMFDGLDDADGAEDVPFDELVGMQGPVFHLVENAFTVLASNMIFLGVVIFVPFSLGRVILHYLSWFFSTASGPVLSTVIPLTDTTLSLANITLKNALTAVRNLSSDAQEGGMISEVAEMLKVNGSGLSEMSSNVSAAVSVEVLKRGSIVTSRLSDVTTLAIGYMFIFTLVFCYFGIVALIRYTRGEPLTMGRFYGIASIAETIPSLFRQFFAAMRHLMTMVKVAFLLVIELGVFPLMCGWWLDVCTIRMFGKTMAHRVQFFSASPLASSLVHWVVGIVYMLQISIFVSLLRGVLRNGVLYFLRDPADPNYNPFRDLIDDPVHKHARRVLLSVAVYGSLIVMLVFLPVKLAMRMAPSIFPLDISVSDPFTEIPADMLLFQICIPFAIEHFKLRTTIKSLLRYWFTAVGWALGLTDFLLPRPDDNSGQENGNAEPGRQDRLQVVQAAVHDQAMVAFAGNEVNRGILAPGDLNAREDYDSDEQSDSDYGFVLRIVLLLVVAWMTLLIFNSALIVVPISFGRALFNSIPLLPITHGIKCNDLYAFFIGSYVIWTAVAGVRYSIEQIRKRRASVLLGQIWKWCAIVFKSSALLSIWIFVIPVLIGLLFELLVIVPMRVPVDESPVFLLYQDWALGLIFLKIWTRLVMLDHMMPLVDDSWRVKFERVREDGFSRLQGLWVLREIVLPIIMKLLTALCVPYVLARGVFPVLGYPLVVNSAVYRFAWLGCLCLSFLCFCAKRFHVWFTNLHNSIRDDRYLIGRRLHNFGEDVLKKTNEGNSSVLQNNSLQGTSLIQHDHDADIGLRLRHVNRQ	1109

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bach11g00281	1109	Coils	Coil	282	302	-	-
	Bach11g00281	1109	CDD	RING_CH-C4HC3_MARCH6	64	113	-	-
	Bach11g00281	1109	ProSiteProfiles	Zinc finger RING-CH-type profile.	57	118	IPR011016	GO:0008270
	Bach11g00281	1109	PANTHER	SSM4 PROTEIN	46	1066	-	-
	Bach11g00281	1109	FunFam	Probable E3 ubiquitin ligase SUD1	50	123	-	-
	Bach11g00281	1109	Pfam	RING-variant domain	65	111	IPR011016	GO:0008270
	Bach11g00281	1109	SUPERFAMILY	RING/U-box	59	115	-	-
	Bach11g00281	1109	MobiDBLite	consensus disorder prediction	1	58	-	-
	Bach11g00281	1109	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	49	123	IPR013083	-
	Bach11g00281	1109	ProSiteProfiles	Zinc finger RING-type profile.	65	112	IPR001841	-
	Bach11g00281	1109	MobiDBLite	consensus disorder prediction	38	53	-	-
	Bach11g00281	1109	MobiDBLite	consensus disorder prediction	13	37	-	-
	Bach11g00281	1109	SMART	ringv_2	64	112	IPR011016	GO:0008270

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bach11g00281	Bach-Chr11	1917744	1922598	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bach11g00281	7	132	C3H Transcription Factor Family	AT1G50440	30.882	1.58e-06	48.9

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bach11g00281	K10661		-	gmx:100813205	1855.11