Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach11g00251 ATCACTTGGTCCTTGGCCTGTTTGGACCAGGTCCTGAACTCGCTCTTGTACTTCAATTTTGAACTTGACGAGTTTGGAGACGAAGGGAGAGAGTCATAAAGAAGCTGCAACCATGGCTCAGCCTACAACCAACGGTACTGCCGATCTGAATCAGCATCAGCATCAGCATCAATGGACGGAGGCACAGCCGCCGCACTATCAGCAGCAATGGATGGGCATGCAGTATCCGGCTGCAGCCATGGCTATGATGCAGCAGCAAATGATGATGTATACACAGCATTACATGCCTTATGTCCACCCTTATCAGCAGCCTCACCAGCAGCTCAAGCCGCCGCCGCTACCGCCACATCAACAGCAGAACCATGGTTCCACCGATGAGATCAGGACGATCTGGCTCGGTGATCTTCATCATTGGATGGATGAGAATTATCTTCTTACTTGTTTTGCTCACACAGGCGAGGTTGTATCAGCCAAGGTCATCCGAAATAAGCAAACTGCTCAATCGGAGGGATATGGATTTGTTGAGTTTTACTCCCGTGCAACAGCGGAAAAAGTTTTGCAGAGCTTTAATGGTACAATGATGCCAAATACTGATCAGCCGTTTCGTTTGAATTGGGCTACATTTAGTGCCGGTGATAGGAGATCTGATTCTAATTCTGATCTCTCTATATTTGTTGGCGACCTTGCCATAGATGTTACTGATGCTATGCTGCAGGAAACCTTTGCTAGCAGATATTCATCTGTTAAGGGAGCAAAAGTTGTTATTGATTCAAACACTGGCCGTTCAAAAGGTTATGGTTTTGTTAGGTTTGGCGATGAAAATGAGAGGACAAGGGCAATTACTGAAATGAATGGCATTTATTGTTCAAGTAGGCCCATGCGAATAAGTGTTGCAACGCCCAAGAAATCGTATGGACATCAACAACAATATTCCTCACAAGCGGTTGTGTTGTCTGGTGGACATTCATCTAATGGTGCTATGGCCCAAGGTTCCCAATCTGAAGGAGACTTTAGTAACACAACTATATTTGTTGGGGGGCTTGATTCTGACGTTAGTGATGAAGATCTCAGACAACCATTTTTGCAATTTGGTGAAGTTGTTTCTGTAAAAATACCAGTGGGTAAAGGGTGTGGTTTTGTTCAATTTGCTGACAGAAAAAATGCCGAGGAAGCAATTCAGGGGTTGAATGGGACGGTAATTGGGAAGCAGACAGTGCGTCTTTCTTGGGGTCGCAGTCCTGGAAATAAGCACTGGAGGACGGATTCCAATAACCAGTGGAATGCTAACCACTATGGAACAAATGGTTATGGAGGCCATGAGTATGCTGTGAGGCAGAATCATGATGTAAGTATGCATGCTGCGGCCACAGTTTAAGGGGCTTCCTAATGGAGTGTAGCAATTGCAAACAGAGCCCCAGGAAACTCAAAATTGTTGTAGGATGGATTTTATTTTTTCACTAAAGTTGTAGTTTGATGAATTTTGTAGCTGGTTTATATCGGCTGTGTGAGGTATTAAGATTGTATTAATACTTTGGTGTGTGTGCCTGCCTGAACAGATTTATATGTTTAGATACTATTTTTTTTTTTGACCCTTGAAACATATTTGTGGAGCTTGGGGAAGTAGTGTATTATTTTCTAGATGGCTCAAGATTATTCTGGATTGTTCTTACCATTACAGAAAAATTACAGCTTACAGACTCGTTTGAATGCTGTGTCA 1717 0.4345 MAQPTTNGTADLNQHQHQHQWTEAQPPHYQQQWMGMQYPAAAMAMMQQQMMMYTQHYMPYVHPYQQPHQQLKPPPLPPHQQQNHGSTDEIRTIWLGDLHHWMDENYLLTCFAHTGEVVSAKVIRNKQTAQSEGYGFVEFYSRATAEKVLQSFNGTMMPNTDQPFRLNWATFSAGDRRSDSNSDLSIFVGDLAIDVTDAMLQETFASRYSSVKGAKVVIDSNTGRSKGYGFVRFGDENERTRAITEMNGIYCSSRPMRISVATPKKSYGHQQQYSSQAVVLSGGHSSNGAMAQGSQSEGDFSNTTIFVGGLDSDVSDEDLRQPFLQFGEVVSVKIPVGKGCGFVQFADRKNAEEAIQGLNGTVIGKQTVRLSWGRSPGNKHWRTDSNNQWNANHYGTNGYGGHEYAVRQNHDVSMHAAATV 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach11g00251 420 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 303 375 IPR000504 GO:0003723
Bach11g00251 420 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 81 379 - -
Bach11g00251 420 Gene3D - 90 170 IPR012677 -
Bach11g00251 420 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 186 256 IPR000504 GO:0003723
Bach11g00251 420 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 305 368 IPR000504 GO:0003723
Bach11g00251 420 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 93 160 IPR000504 GO:0003723
Bach11g00251 420 MobiDBLite consensus disorder prediction 65 86 - -
Bach11g00251 420 CDD RRM2_SECp43_like 183 262 - -
Bach11g00251 420 CDD RRM1_SECp43_like 92 172 - -
Bach11g00251 420 Gene3D - 283 409 IPR012677 -
Bach11g00251 420 CDD RRM3_NGR1_NAM8_like 302 373 - -
Bach11g00251 420 MobiDBLite consensus disorder prediction 1 26 - -
Bach11g00251 420 FunFam Polyadenylate-binding protein RBP47 285 405 - -
Bach11g00251 420 FunFam Polyadenylate-binding protein RBP47B 90 170 - -
Bach11g00251 420 SUPERFAMILY RNA-binding domain, RBD 294 401 IPR035979 GO:0003676
Bach11g00251 420 SUPERFAMILY RNA-binding domain, RBD 54 175 IPR035979 GO:0003676
Bach11g00251 420 Gene3D - 171 278 IPR012677 -
Bach11g00251 420 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 91 171 IPR000504 GO:0003723
Bach11g00251 420 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 184 263 IPR000504 GO:0003723
Bach11g00251 420 SMART rrm1_1 92 167 IPR000504 GO:0003723
Bach11g00251 420 SMART rrm1_1 304 371 IPR000504 GO:0003723
Bach11g00251 420 SMART rrm1_1 185 259 IPR000504 GO:0003723
Bach11g00251 420 FunFam Polyadenylate-binding protein RBP47B 172 274 - -
Bach11g00251 420 SUPERFAMILY RNA-binding domain, RBD 168 288 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach11g00251 Bach-Chr11 1704812 1709227 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach11g00251 90 372 Eukaryotic Initiation Factors Gene Family AT2G23350 29.010 5.55e-27 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach11g00251 - - qsa:O6P43_031013 639.032