Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach11g00135 ATGGAAAAGGGAAAGTCTAGCTCAGGCCGCCAAAGGATTCCTATTGAGAAAATACCAAAGAAAAGTCATTTGCAGGTTACATTCTCCAAACGCCGTTCAGGGCTTTACAAGAAAGCTAGTGAGCTTTGCACCCTTTGTGGAGTTGAAATTGCAATTATAGTATTTTCTCCAGCTGATAAGGCCTTCTCTTTTGGCCATCCAGAAGTTGAGTCTATCGTTGATCGCTTTCTTACTAGTAACCCTCCACTTGATTCATCAGTTGCCGATCACCAACTTGTTGAAGCCCACCGAAATGCTAATATTCGTGATCTCAACATGCAGCTCACGCAGCTTGTAAATCAATTGGAGACTGAGAAAAAGCGAGGTGAAGAGTTAGATCAAGTGAGGAGAGTTAGGCAGAGGCAATTCTGGTGGGAGAGTCCTGTTGATGAACTTGGCTTAAATGAGTTGCAGCAGTTGCAGTTTTTGATGGAGGAGCTGAAGAACAATGTAACAAAACAGGCTAACAAGATATTGATAGAGCAGAGTAGTATGTCTTCAATCAATGGGGCAAGTGGACTTGGATACTCTGATGCCTTTGATAGAAAACTTGAGATCAGGACTCCTTCTGCTCTTCCTAATGCTTATAATCTCAACTTTCGACATGGCTATCTTTGA 657 0.4231 MEKGKSSSGRQRIPIEKIPKKSHLQVTFSKRRSGLYKKASELCTLCGVEIAIIVFSPADKAFSFGHPEVESIVDRFLTSNPPLDSSVADHQLVEAHRNANIRDLNMQLTQLVNQLETEKKRGEELDQVRRVRQRQFWWESPVDELGLNELQQLQFLMEELKNNVTKQANKILIEQSSMSSINGASGLGYSDAFDRKLEIRTPSALPNAYNLNFRHGYL 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach11g00135 218 FunFam Agamous-like MADS-box protein AGL62 20 86 - -
Bach11g00135 218 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Bach11g00135 218 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Bach11g00135 218 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Bach11g00135 218 PANTHER MADS BOX PROTEIN 10 167 - -
Bach11g00135 218 Coils Coil 98 125 - -
Bach11g00135 218 SUPERFAMILY SRF-like 9 80 IPR036879 GO:0003677|GO:0046983
Bach11g00135 218 Gene3D - 20 89 IPR036879 GO:0003677|GO:0046983
Bach11g00135 218 Coils Coil 150 170 - -
Bach11g00135 218 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Bach11g00135 218 CDD MADS_MEF2_like 9 80 IPR033896 GO:0000977|GO:0045944
Bach11g00135 218 Gene3D - 90 184 - -
Bach11g00135 218 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Bach11g00135 218 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach11g00135 Bach-Chr11 999512 1000168 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach11g00135 5 172 Type I MADS-box Gene Family AT5G60440 52.071 1.65e-56 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Bach11g00135 SRF-TF 2e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach11g00135 - - lja:Lj0g3v0067779.1 272.707