LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bach11g00104	TTTGACTTCCCCACCATTTCACCCTGTTTCTGGTAATGAGAATCCATGGACACTAACTGCTTTCTTACATTACCACCTTTCTGTGAGCCAAGTTTCCTGTTTTTAAACTTCTTTGTATGTTTAGTTTTTTCATTAAAATTCTTCACATCAGAACTCCTCTTATGTGTTTACCTTTCACAGCTGTCGCCGGAAACTATTCACAACCGTTTGCCTATTGTTCGCCTTGGGCAGGATAGAATGAGAACCATCGAGAGGCAGTATGAGAGAGTAGAGTGAAAGAGTATGAAATAAGGATGCGGAGAGAGTTCGAGGTAGAGCAAGAGGAGTAGAAACAGAGAAACCTGAGCGGTGAGAAAGGAAGCAGATTGAGAAAAAGGAATTCAAAATCCTTTGTCTCCTTACTTCGCGATTTGTTAAATAGCACAGTGATTCTGCTATAGTTGGGATGAGCATTACATTTGGTACCTGCAGCCCCTTGGAAACAACAAACTGGCGAGAGCAATGCACTCATCAGTGACATAGCAGACAGTTTCTGAGCTTTGTAACAAGAGAGGGAAAAGAGAAGTGATGGGGTCGAGAATTATGGGACAATTTGAAACTATTTTAAAAGAAGCTTGGAGTAAAACATTCTTAGTTGCAAAGATTTTTTGTTTTCTTCATGTCACAGGAACCTATGGGTGTCAACTTACCAATAGCTATGGTCCTAGCATGCTTCCCACATTGGGTTTGAGTAATACCTTAATATATGAAAGTCTCTCAACCCGGTGTGATAATATTCGGCCAGGAGACATTGTCATTGTGCAGTCACCTGAGAATCCTAGAAAGTACACGACAAAGCGCTTGATTGGAATGGAAGGTGATACCGTTACGTATCTTGTTGATCCCAAGGAGAGTGATAAGTACGAGACCGTTGTGATTCCAAAGGGACACATTTGGGTGCAAGGAGACAACATTTACAATTCCAATGATTCAAGAAATTTTGGCCCTGTTCCTTATGGCCTTCTTATAGGCAAGGCATTCTGGAAGATATGGCCACTTGAAGGTTTTGGACCCTTGGGCAAAAACTGATTGAAGTTTTGGTATTAAATTATTAATGCCATACAACTCTTAAGCTATATAACTATTTCTGTTCAATGCTGAAGGGAACACTTTTTTAGACAGATTCCCGCTTCTCTGGGTAAATTGCTCTTGAAGTTTTAAGCGTTGCTTTGGTTACATACAGAATATGATTTTACCCACCTGGGATCAAGCAATTTGCTTGCTGTTTTCTGAATGATCAACGACATTTCAAGAGTGGTGTAAAGTGATTTACATTTGAG	1319	0.4018	MGSRIMGQFETILKEAWSKTFLVAKIFCFLHVTGTYGCQLTNSYGPSMLPTLGLSNTLIYESLSTRCDNIRPGDIVIVQSPENPRKYTTKRLIGMEGDTVTYLVDPKESDKYETVVIPKGHIWVQGDNIYNSNDSRNFGPVPYGLLIGKAFWKIWPLEGFGPLGKN	166

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bach11g00104	166	CDD	S26_SPase_I	45	150	IPR019533	GO:0004252\|GO:0006465
	Bach11g00104	166	FunFam	Inner membrane protease subunit 1	34	162	-	-
	Bach11g00104	166	SUPERFAMILY	LexA/Signal peptidase	44	163	IPR036286	-
	Bach11g00104	166	Gene3D	Umud Fragment, subunit A	35	160	-	-
	Bach11g00104	166	PANTHER	PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED	6	165	-	-
	Bach11g00104	166	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	88	100	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Bach11g00104	166	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	36	52	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Bach11g00104	166	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	117	136	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Bach11g00104	166	Pfam	Signal peptidase, peptidase S26	112	155	IPR019533	GO:0004252\|GO:0006465
	Bach11g00104	166	Pfam	Signal peptidase, peptidase S26	17	102	IPR019533	GO:0004252\|GO:0006465

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bach11g00104	Bach-Chr11	769219	771261	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bach11g00104	48	164	MADS-box Gene Family	AT1G29960	52.542	1.16e-43	139

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bach11g00104	K09647		-	ming:122058747	214.157