Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach11g00084 ATGAGCTTCGGAAGCAGAGAGCAAGGTACAACCTTTTCAACATCAGCTGCAAGCAACATGAAGATCAATACCAAGGCCAGCACCCTGTTTTTCAGCGACAAAGCACTAGCTCAGTGCAGTGCCGATGCTGGGATTTTGGCTGAGTTTGACCAATCCGATGTGTCTGGTAAATCATTCGACTATTCAAGGTCGGTTATTCATCCTCCCAAATTGGTGTCGGAAGAGAAAATGGTTACTTATTTGTCGAAAATCCAAAGAGGGGGTCTTATTCAGCCCTTTGGGTGTCTGATTGCAATTGAAGAAGCCACTTTCAGAATCATCAGCTACAGTGAGAATTGCTTTGAATTGTTGAGTTTAAACAGACAATTTGATTCGAAGCAGTTTAAGGGTCTGATTGGAGTTGATGCTACAACACTGTTCACGCCTTCTTCTGGGGCTTCCCTTGCAAAAGCTGTGGCTTCTAGGGAAATTTCATTTTTGAACCCAATTTGGGTCTATTCAAGGGCAACCCAGAAGCCATTCTATGCTATAATGCATAGAATTGATGTAGGGATTGTGATTGATTTGGAGCCTGCAAAGTCTAGTGATCCTGCATTCTCACTTGCTGGTGCTGTGCAGTCTCAGAAGATAGCTGTTAGGGCAATCTCAAGGCTGCAATCTCTTCCTCGGGGAGATATTGGTGTTTTATGTGATACTGTTGTTGAGGAAGTGCAGAAGCTTACTGGTTATGAGAGGGTTATGGTTTATAAGTTCCATGATGATGATCATGGTGAAGTTGTATCTGAGATTAGAAGGTCAGATTTAGAGCCCTATTTGGGTTTGCATTATCCAGCCGCGGATATCCCTCAAGCTGCTCGCTTTTTGTTCAAGCAAAATCGGGTTAGGATGATTTGTGATTGCAATGCAAATCCAGTTCAGGTCATTCAGAGTGACGAGTTAAGGCAGCCTCTTATCTTGGTCAATTCAACCCTTCGGTCACCACATGGATGTCACAAACAATACATGGCTAACATGGGCTCCGTTGCCTCTCTGGTACTGGCAATTTTAGTCAATGGGAATGATACAACAAGGCTTTGGGGTTTGCTAGTTTGTCATCACACTTCACCGCGCTATGTGCCTTTTCCACTTCGCTATGCTTGTGAGTTCCTTATGCAGGCTTTTGGACTGCAGCTTCACATGGAGATTCAATTGGCATCACAGATGGCAGAGAAGAAAATTCTTAGAACTCAGACCTTACTGTGTGACATGCTCCTCCGTGATGCCCCATTTGGTATCGTGACTCAGTCTCCCAGTATCTTGGACCTTGTTAAGTGTGATGGAGCTGGAATGTATCATGATGGAAAGTGTTGGTTGTTAGGCGTAACCCCAACTGAGTCACAGGTGAAAGACATCGCAGAATGGCTACTTAATTGTCATGGCGACTTAACAGGTTTGAGCACAGATAGTTTGGCAGATTCTGGTTATCCGGGTGCTTCTTTACTGGGGGAGGCAGTTTGTGGCATGGCCACAGCAAGAATCAATTCAAGAGATTTCCTGTTCTGGTTCAGGTCTCACACTGCTAAGGAAGTTAAATGGGGAGGAGCCAAGCACAATCCAGAGGACAAGGATGATGGAGGAAAAATGAACCCAAGATCATCATTTAATGCTTTTCTTGAAGTTTTCAAAAGCAAAAGTCTGCCTTGGGAAGTGTCAGAAATCAATGCTATTCATTCATTACAACTTATAATGAGGGACTCATTCCAAGACACTCAGAACTCAGGTCCGAAGACTCTAAATAATGTGCAGCAGCAGAGTGACACTGCAATGGGTGGGGTGGATGAACTCAGTTCAGTAGCATTTGAAATGGTTAGATTAATTGAAACAGCAACAGTTCCAATTCTGGGGGTTGACTCAGATGGTCTAATCAATGGATGGAATGCAAAAATTGCTGAATTGGCTGGCCTGCCGGCAAGTGAAGCTATGGGAAAATCCCTCGTAAATGAAGTTCTACATGAGGACTCACGTGAAAAAGTCAAAAAAATTTTAAGCAGAGCCTTGCAAGGTCAGGAGGACAAAAATATTGAGTTGAAATTAAAACACCTTGGGCTTCATCAAGAAAAGTCAGTTGTGCATATTATAGCCAATGCGTGCACAAGTAGGGATTACACAAACTCTGTTGTTGGGGTGTGCTTCGTGGGTCAAGATATCACTAACGAGAAAGTTGTTCTGGATAAATTCATCAGGTTGGAAGGTGATTACAAAACAATCATACAGAGTTTCAGTCCACTGATTCCACCCATTTTTGCTTCTGATGAGAATGCTTGCTGCTCTGAATGGAATGCAGCAATGGAAAGGTTAACTGGTTGGAAGAGAGATGAAGTTATAGGAAAAATGCTTCCTGGGGAAATCTTTGGAAGTTTATGTCAGTTGAAAGATCAAGATATACTGACTAATTTTGTGATTTTATTGTATCGAGGAATCGGTGGTCAAGATTCTGAGAAGTTCCCTTTTGGATTTTTTAATAGAACGGGAGAATTCATAGACGTCTTCTTAACAGCAAACAGGAGAACTGATGCTGGTGGAAATATAGTTGGTTGTTTCTGCTTCTTGCAGATTGTACCACTAGACCAGTATCAGTTCTCAGAAGGACACAAATCAAAAAGCAGGAATCGCCCTTCAGAATTTAAGCAGTTGGCTTATATATTACAAGAGATGAAGAATCCTTTAAATGGTATACGCTTCATGCACAAACTTCTGGAAAACACCGCCGTCTCAGAAAACCAGAAACAATTCCTTGACACTAGCGATGCATGTGAAAGACAGATCATGGCAATCATTGAGGATACAAATTTAGGAAGTCTTGAAGAAGGCACTGTACAGCTAAACATGGAAGAATTCGTTCTTGGAAATATTTTAGATGCCATTGTCAGTCAAGTCATACTCTTGATAAGAGGAAAAAACCTGCAGCTGTTTCACGAAATTCCAGATGAGATAAAAACGATTAAACTATACGGTGATCAAATTAGGCTTCAGGTCGTCTTATCTGACTTTTTGCTTAACGTGGTCAGTCATACACCATCTCCTAATGGCTGGGTAGAAATCAAAATTTCACCTGGCCTGAAGATTATACAGGATGGTAATGAGCTTATACATCTGCAGTTCAGATTAATTCATGCTGGTCAAGGTCTACCTTCCACTGTTCTTCAGGATATGTTTGAAGGAGGAAACGAATGGAATACACCGGAAGGTCTAGGGTTAAACATGTCCAGGAAAATTCTCAGTAGGATGAATGGTCATGTCCAGTATGTAAGAGAACATAACAAGTGCTACTTCCTCATTGATCTTGAACTTAGAACAAGAAAAGAAAGGCAAAGGGTTTTGCAAGAAGATAGAAGCGTGATGACCTAG 3387 0.4193 MSFGSREQGTTFSTSAASNMKINTKASTLFFSDKALAQCSADAGILAEFDQSDVSGKSFDYSRSVIHPPKLVSEEKMVTYLSKIQRGGLIQPFGCLIAIEEATFRIISYSENCFELLSLNRQFDSKQFKGLIGVDATTLFTPSSGASLAKAVASREISFLNPIWVYSRATQKPFYAIMHRIDVGIVIDLEPAKSSDPAFSLAGAVQSQKIAVRAISRLQSLPRGDIGVLCDTVVEEVQKLTGYERVMVYKFHDDDHGEVVSEIRRSDLEPYLGLHYPAADIPQAARFLFKQNRVRMICDCNANPVQVIQSDELRQPLILVNSTLRSPHGCHKQYMANMGSVASLVLAILVNGNDTTRLWGLLVCHHTSPRYVPFPLRYACEFLMQAFGLQLHMEIQLASQMAEKKILRTQTLLCDMLLRDAPFGIVTQSPSILDLVKCDGAGMYHDGKCWLLGVTPTESQVKDIAEWLLNCHGDLTGLSTDSLADSGYPGASLLGEAVCGMATARINSRDFLFWFRSHTAKEVKWGGAKHNPEDKDDGGKMNPRSSFNAFLEVFKSKSLPWEVSEINAIHSLQLIMRDSFQDTQNSGPKTLNNVQQQSDTAMGGVDELSSVAFEMVRLIETATVPILGVDSDGLINGWNAKIAELAGLPASEAMGKSLVNEVLHEDSREKVKKILSRALQGQEDKNIELKLKHLGLHQEKSVVHIIANACTSRDYTNSVVGVCFVGQDITNEKVVLDKFIRLEGDYKTIIQSFSPLIPPIFASDENACCSEWNAAMERLTGWKRDEVIGKMLPGEIFGSLCQLKDQDILTNFVILLYRGIGGQDSEKFPFGFFNRTGEFIDVFLTANRRTDAGGNIVGCFCFLQIVPLDQYQFSEGHKSKSRNRPSEFKQLAYILQEMKNPLNGIRFMHKLLENTAVSENQKQFLDTSDACERQIMAIIEDTNLGSLEEGTVQLNMEEFVLGNILDAIVSQVILLIRGKNLQLFHEIPDEIKTIKLYGDQIRLQVVLSDFLLNVVSHTPSPNGWVEIKISPGLKIIQDGNELIHLQFRLIHAGQGLPSTVLQDMFEGGNEWNTPEGLGLNMSRKILSRMNGHVQYVREHNKCYFLIDLELRTRKERQRVLQEDRSVMT 1128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach11g00084 1128 SMART HisKA_10 886 950 IPR003661 GO:0000155|GO:0007165
Bach11g00084 1128 SUPERFAMILY GAF domain-like 403 582 - -
Bach11g00084 1128 NCBIfam PAS domain S-box protein 618 733 IPR000014 -
Bach11g00084 1128 PIRSF Phytochrome_conventional 7 1119 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Bach11g00084 1128 FunFam Phytochrome 607 739 - -
Bach11g00084 1128 ProSitePatterns Phytochrome chromophore attachment site signature. 325 334 IPR013516 -
Bach11g00084 1128 PANTHER OS08G0260000 PROTEIN 77 947 - -
Bach11g00084 1128 CDD HisKA 891 941 IPR003661 GO:0000155|GO:0007165
Bach11g00084 1128 Gene3D - 400 573 IPR043150 -
Bach11g00084 1128 SUPERFAMILY PYP-like sensor domain (PAS domain) 759 861 IPR035965 -
Bach11g00084 1128 Gene3D PAS domain 758 867 - -
Bach11g00084 1128 Pfam GAF domain 225 395 IPR003018 GO:0005515
Bach11g00084 1128 ProSiteProfiles PAS repeat profile. 745 797 IPR000014 -
Bach11g00084 1128 SUPERFAMILY GAF domain-like 205 392 - -
Bach11g00084 1128 PRINTS Phytochrome signature 707 724 IPR001294 GO:0006355|GO:0009584
Bach11g00084 1128 PRINTS Phytochrome signature 727 747 IPR001294 GO:0006355|GO:0009584
Bach11g00084 1128 PRINTS Phytochrome signature 325 346 IPR001294 GO:0006355|GO:0009584
Bach11g00084 1128 PRINTS Phytochrome signature 140 162 IPR001294 GO:0006355|GO:0009584
Bach11g00084 1128 PRINTS Phytochrome signature 240 259 IPR001294 GO:0006355|GO:0009584
Bach11g00084 1128 PRINTS Phytochrome signature 543 561 IPR001294 GO:0006355|GO:0009584
Bach11g00084 1128 PRINTS Phytochrome signature 425 445 IPR001294 GO:0006355|GO:0009584
Bach11g00084 1128 PRINTS Phytochrome signature 510 529 IPR001294 GO:0006355|GO:0009584
Bach11g00084 1128 PRINTS Phytochrome signature 614 630 IPR001294 GO:0006355|GO:0009584
Bach11g00084 1128 PRINTS Phytochrome signature 633 648 IPR001294 GO:0006355|GO:0009584
Bach11g00084 1128 Gene3D PAS domain 613 733 - -
Bach11g00084 1128 Gene3D - 929 1104 IPR036890 -
Bach11g00084 1128 ProSiteProfiles Histidine kinase domain profile. 893 1112 IPR005467 -
Bach11g00084 1128 SMART gaf_1 225 405 IPR003018 GO:0005515
Bach11g00084 1128 Pfam His Kinase A (phospho-acceptor) domain 890 950 IPR003661 GO:0000155|GO:0007165
Bach11g00084 1128 CDD PAS 756 864 IPR000014 -
Bach11g00084 1128 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 998 1109 IPR003594 -
Bach11g00084 1128 Pfam PAS fold 80 192 IPR013654 GO:0006355
Bach11g00084 1128 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 225 385 IPR016132 -
Bach11g00084 1128 SMART HKATPase_4 998 1112 IPR003594 -
Bach11g00084 1128 Gene3D PAS domain 83 328 - -
Bach11g00084 1128 SMART pas_2 613 680 IPR000014 -
Bach11g00084 1128 SMART pas_2 744 813 IPR000014 -
Bach11g00084 1128 FunFam Phytochrome 400 531 - -
Bach11g00084 1128 Pfam PAS fold 745 864 IPR013767 GO:0006355
Bach11g00084 1128 Pfam PAS fold 614 729 IPR013767 GO:0006355
Bach11g00084 1128 FunFam Phytochrome 758 866 - -
Bach11g00084 1128 ProSiteProfiles PAS repeat profile. 611 682 IPR000014 -
Bach11g00084 1128 Gene3D - 206 556 IPR029016 -
Bach11g00084 1128 SUPERFAMILY PYP-like sensor domain (PAS domain) 84 194 IPR035965 -
Bach11g00084 1128 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 951 1110 IPR036890 -
Bach11g00084 1128 CDD PAS 622 729 IPR000014 -
Bach11g00084 1128 Pfam Phytochrome region 408 583 IPR013515 GO:0006355|GO:0009584
Bach11g00084 1128 CDD HATPase_Phy-like 997 1110 IPR044767 -
Bach11g00084 1128 SUPERFAMILY PYP-like sensor domain (PAS domain) 617 725 IPR035965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach11g00084 Bach-Chr11 592032 596715 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach11g00084 9 1112 Histidine Kinase Gene Family AT4G18130 63.049 0.0 1460
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach11g00084 K12123 - gmx:100808192 1815.43