LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bach11g00064	ATGGCGTTTCCCAACCAATCCATGTCAGTTTCTCCACAGAGAAAGATGGGAAGGGGGAAGATTGAGATCAAGAGGATTGAGAACACCACCAATCGCCAAGTCACCTTCTGTAAGCGTAGAAATGGCCTTCTCAAGAAGGCATATGAATTATCTGTGCTTTGTGATGCTGAAGTTGCTCTAATCGTCTTCTCTAGCCGTGGACGCCTCTACGAGTATGCTAATAACAGTGTCAAAGCAACAATTGAGAGGTACAAGAAGGCATGTTCTGATTCTACCGGTGGTGGATCAACTTCTGAGATTAATGCTCAGTATTACCAACAAGAAGCTGCCAAACTGCGACAGCAAATTAACAATCTTCAGAATAACAACAGGCAAATGATGGGTGAGACTTTGAGCAATATGAGTGTCAAGGAACTCAAAAACCTGGAGACCAGGTTAGAAAAAGGAATTGGCAGAATTCGTTCCAAAAAGATAGCTGAAAGTGAGAGAAGTCAACATAACATGAGCTTGGTGCCTGCAGGAAGCTCAAGCTATGAAGCTGTGCAGACTCATCAGCACCCATATGACTCTCGAACCTACTTCCAAGTGACTGGATTACAACCCAGTAATCAGTATTCGAAGCAAGATCAGATGGCCCTTCAATTAGTGTAA	651	0.4347	MAFPNQSMSVSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKATIERYKKACSDSTGGGSTSEINAQYYQQEAAKLRQQINNLQNNNRQMMGETLSNMSVKELKNLETRLEKGIGRIRSKKIAESERSQHNMSLVPAGSSSYEAVQTHQHPYDSRTYFQVTGLQPSNQYSKQDQMALQLV	216

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bach11g00064	216	Gene3D	-	28	93	IPR036879	GO:0003677\|GO:0046983
	Bach11g00064	216	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	25	72	IPR002100	GO:0003677\|GO:0046983
	Bach11g00064	216	SUPERFAMILY	SRF-like	17	88	IPR036879	GO:0003677\|GO:0046983
	Bach11g00064	216	Pfam	K-box region	98	157	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Bach11g00064	216	ProSiteProfiles	MADS-box domain profile.	16	76	IPR002100	GO:0003677\|GO:0046983
	Bach11g00064	216	MobiDBLite	consensus disorder prediction	164	183	-	-
	Bach11g00064	216	FunFam	agamous-like MADS-box protein AGL11	28	111	-	-
	Bach11g00064	216	MobiDBLite	consensus disorder prediction	158	183	-	-
	Bach11g00064	216	Coils	Coil	102	129	-	-
	Bach11g00064	216	ProSiteProfiles	K-box domain profile.	102	202	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Bach11g00064	216	SMART	madsneu2	16	75	IPR002100	GO:0003677\|GO:0046983
	Bach11g00064	216	CDD	MADS_MEF2_like	17	91	IPR033896	GO:0000977\|GO:0045944
	Bach11g00064	216	PANTHER	SERUM RESPONSE FACTOR HOMOLOG	16	179	-	-
	Bach11g00064	216	PRINTS	MADS domain signature	38	53	IPR002100	GO:0003677\|GO:0046983
	Bach11g00064	216	PRINTS	MADS domain signature	18	38	IPR002100	GO:0003677\|GO:0046983
	Bach11g00064	216	PRINTS	MADS domain signature	53	74	IPR002100	GO:0003677\|GO:0046983
	Bach11g00064	216	ProSitePatterns	MADS-box domain signature.	18	72	IPR002100	GO:0003677\|GO:0046983

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bach11g00064	Bach-Chr11	466136	471991	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bach11g00064	14	216	MADS-box Gene Family	AT3G58780	58.723	3.42e-86	253

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-MIKC	Bach11g00064		K-box	3e-19	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bach11g00064	K09264		-	gmx:732595	330.872

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Bach11g00064	11	466136	471991	Bach7g01637	7	25564551	25571181	BWGD
	Bach11g00064	11	466136	471991	Bach11g00064	11	466136	471991	ECH