Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach10g01580 ATGCTTAATTGGGTGCTTTTGGCACTTTTCCTGCCCTGTGCTGGCATGAGCATCATCATCATAGTCTACATATGCCTTCTCTGGTACGCCACTACCCACCAATCCAATGTTATGCTACCGGTGAAATCCCTCTCTGAGAAAGGCTTGTCGTCTTCGGAGCTCGACAAGTTACCCAAAATCACCGGAAAAGAACTGGTGATAGGCACTGAATGCGCCGTCTGCCTTGACGAGATCGAGGAGGAGCAACCGGCTCGACTGGTTCCTGGTTGCAACCACGCGTTCCATATGGAATGTATTAACATTTGGCTTTCCAAGCATCCTCTGTGTCCGCTTTGTAGAGCTAAGCTTGATCCTCAGCTTTTCAATTCATCTCAGAATCCATGCTAG 387 0.4858 MLNWVLLALFLPCAGMSIIIIVYICLLWYATTHQSNVMLPVKSLSEKGLSSSELDKLPKITGKELVIGTECAVCLDEIEEEQPARLVPGCNHAFHMECINIWLSKHPLCPLCRAKLDPQLFNSSQNPC 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach10g01580 128 ProSiteProfiles Zinc finger RING-type profile. 71 113 IPR001841 -
Bach10g01580 128 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 33 119 IPR013083 -
Bach10g01580 128 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 16 123 - -
Bach10g01580 128 SUPERFAMILY RING/U-box 70 119 - -
Bach10g01580 128 SMART ring_2 71 112 IPR001841 -
Bach10g01580 128 Pfam Ring finger domain 70 113 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach10g01580 Bach-Chr10 21576871 21577257 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach10g01580 1 128 C3H Transcription Factor Family AT5G42200 50.000 2.40e-42 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach10g01580 K19037 - gmx:100817919 206.453