Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach10g01507 CTTGGAACTCATCCATGGCTTCTCATTTTCACCATCAGAATGTTATCAATTTCTACCTAATTATTCTCAAAAGTAGTCTTCTGAAGCTTACAATTCCTAACAAATTTACAAAGAAATATGGGTTTGCTTTATCAAACCCAGTGTCTCTGAAGCCTCCAGATGACACTGAATGGAAAGTGTATTGGTCGAAACATGATGGTGATATTAGGTTTCAAAAAGGTTGGGAAGAATTTGTTAGATATTACTCTCTAGATGAAGGACATTTAGTGTTGTTTAAATATGGAGAAACCTCTGGTTTTGATGTACTCTTATTTGACAAGAGTAACCTGGAAATAGACTATCCACTCCGTAGTCTCAATGATGAAAAGGAAAACCTTGATCAGTTGAGTGATGACTCTGATGAAATCTTGGATGAGATACCTCCTCACCACAAAGCTGGACCAAAATTGCGGTCGCCATCACATCAACCTTATAAGAAACTGAGAATTGGTAGAAATTGGCGTGCTGAAAACAGCTCCAATCTGAAAAACTTGCATATGCATGTCCAAACTACAGGTGGTGAATTTAAGTGCACAGAGTTTAAGAAGACAAGTAATGGCAATGTAGATATGAAATCAATCAAGGAGGGACAGGAAGAAGATATTGGATCAAGCATTTTTACTGATAGGAAATTCCCAAATCCTGAGCACAATACATGGATGAAACCATTAACTGCTATTCAAAGGACTGAAGCTTTCAAGAGAGCCAGTACTTTCAGATCTGAGAACCCCTTTTTCATAGTAGCCCTGCCGTTTTCATATGTTTCCAACAGTTATATGTATATACCAGCACAATTCACAGAACAATATTTGAAGGAAAAGCAAGCTGCTGTACTCCTCCAAGTCTTGGATGGAAAAACTTGGTCTGCTATTTATAAGTTTCCCAAAATCAAGGCTGGCTGGAAAGAGTTTGTGATAGATAATAATTTGAAAGTTGGTGATGTTTGTGTTTTTGAGCTGATTAAGAGCTCTAGCCTGATTTTCACAGTATTAATTTTCCCAGTTGCTGAAGATCAGCGCTGCTCATTTTGGCAAGATAACAGGAACAAGATGGGGATTGGAAGCTTTTCTAATTTTTCAATATGCAATTCTAAAGTTTCTGGAAGGACGCAGATTACTAATGAAAGTAAAGCTTTTGAGAGGGCTAAATCTTACAAATCTTGGAATCCATTTTTCAAGGTTGTCATGAAAAAATCTTATGCAACAAGCTTGCATGTACCCTTAGAATTTGCCAACAAATATTTCAGTTCTGAAATGAGTCCAAGGCTTATCACCCTTCAGAGAGGAGATGGTAGACTATGGTTTGTTACGCTCACTTGCAAAAAATCTGGTAAATATCAGACACATGATTTTTTGCATGGATGGAAGAAATTTGCGGTGGACAATGATTTGCAAATAGGGGATTTTTGTGTCTTTGAGCTCGTTGATAAAATCAAACTTACTCTTACAGTCACAATTTTTCAGTCCACTGAACACCCAGCTCATTTAGAGTATCCAGCTCAAGGCAGTGCAGCTAATGAAGCAGAACCTGAGGGAATCTTTGATTTTGAGACAAAAACTAATTGCGCTAGTAATGTTAAATTGGAGAACTCATTTCTGTCTGACCAACTGAGATCCAAATTGTCTAATTGGTCTCTGAGAAAAGCTGAAGTTGAATCTAGTGGAAACTCTATTAAAAGAACTTCATATTCATCATTGAATAAGCACAGGGTAACTGGAATTCTGGAAGAAACTGAAACATTCAACTCAAAGAAACCATTTTTCAAAGTCTACATAAGGCCTTCATACGTTCTAAATAACACCCCATGTGTACCTAAAGCCTTTCTCAGTATCTTTAGTGCAGAAAGGGAGAAGAATGGACAGATACAGCTGGGAGAAAAAATGTGGCCTGTGAAGTTGCTGTATTATCCACACTTGACATCAGGCAAGTTCTCTGCTGGTTGGTTCTCCTTCGCGAAAGAGAATAACTTGCAAGAGGGAGATGTTTGTGTCTTTGAGCTGATTAACAAAGAGGATGCAGTGCTGAAAGCTCATATTTTCAGATGCCACGGTTTTCGTGTGCTGCGTGCTCTCTGCTGTGCTCTTTCAGCTTGCCCCAGTCACCTCGAGCTCACAACCATGGCGGAACAGACGGAGAAGGCTTTCTTGAAGCAGCCCAAAGTGTTTCTCAGCTCGAAGAAATCTGGGAAGGGGAAGAGGCCTGGGAAAGGAGGAAACCGATTCTGGAAGTCTATTGGGTTGGGATTCAAGACACCCAGAGAGGCAGTTGAAGGAACTTACATTGATAAGAAATGTCCATTCACTGGCACTGTTGCCATCCGGGGTCGTATTCTTGCTGGTACTTGCCATAGTGCCAAGATGAATAGAACTATCATTGTTCGCCGCAATTACCTTCACTATATTAAGAAATACCAAAGGTATGAGAAGAGGCACTCAAACATTCCAGCTCATATATCTCCATGTTTCCGTGTAAAGGAGGGAGATCATGTCATTATTGGGCAGTGCAGGCCACTGTCCAAGACTGTTAGATTTAATGTGTTGAAAGTGATTCCAGCTGGGTCTTCTGGAGGTGTGAAGAAAGCTTTTGCTGCAATTTAA 2636 0.3968 MASHFHHQNVINFYLIILKSSLLKLTIPNKFTKKYGFALSNPVSLKPPDDTEWKVYWSKHDGDIRFQKGWEEFVRYYSLDEGHLVLFKYGETSGFDVLLFDKSNLEIDYPLRSLNDEKENLDQLSDDSDEILDEIPPHHKAGPKLRSPSHQPYKKLRIGRNWRAENSSNLKNLHMHVQTTGGEFKCTEFKKTSNGNVDMKSIKEGQEEDIGSSIFTDRKFPNPEHNTWMKPLTAIQRTEAFKRASTFRSENPFFIVALPFSYVSNSYMYIPAQFTEQYLKEKQAAVLLQVLDGKTWSAIYKFPKIKAGWKEFVIDNNLKVGDVCVFELIKSSSLIFTVLIFPVAEDQRCSFWQDNRNKMGIGSFSNFSICNSKVSGRTQITNESKAFERAKSYKSWNPFFKVVMKKSYATSLHVPLEFANKYFSSEMSPRLITLQRGDGRLWFVTLTCKKSGKYQTHDFLHGWKKFAVDNDLQIGDFCVFELVDKIKLTLTVTIFQSTEHPAHLEYPAQGSAANEAEPEGIFDFETKTNCASNVKLENSFLSDQLRSKLSNWSLRKAEVESSGNSIKRTSYSSLNKHRVTGILEETETFNSKKPFFKVYIRPSYVLNNTPCVPKAFLSIFSAEREKNGQIQLGEKMWPVKLLYYPHLTSGKFSAGWFSFAKENNLQEGDVCVFELINKEDAVLKAHIFRCHGFRVLRALCCALSACPSHLELTTMAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAVEGTYIDKKCPFTGTVAIRGRILAGTCHSAKMNRTIIVRRNYLHYIKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGVKKAFAAI 873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach10g01507 873 SUPERFAMILY DNA-binding pseudobarrel domain 395 499 IPR015300 -
Bach10g01507 873 SMART B3_2 595 691 IPR003340 GO:0003677
Bach10g01507 873 SMART B3_2 253 344 IPR003340 GO:0003677
Bach10g01507 873 SMART B3_2 13 103 IPR003340 GO:0003677
Bach10g01507 873 SMART B3_2 400 498 IPR003340 GO:0003677
Bach10g01507 873 MobiDBLite consensus disorder prediction 130 151 - -
Bach10g01507 873 SUPERFAMILY Nucleic acid-binding proteins 782 861 IPR012340 -
Bach10g01507 873 Gene3D - 576 692 IPR015300 -
Bach10g01507 873 Gene3D - 379 500 IPR015300 -
Bach10g01507 873 Gene3D - 232 346 IPR015300 -
Bach10g01507 873 CDD B3_DNA 398 495 IPR003340 GO:0003677
Bach10g01507 873 Gene3D - 6 104 IPR015300 -
Bach10g01507 873 CDD B3_DNA 595 689 IPR003340 GO:0003677
Bach10g01507 873 CDD B3_DNA 13 101 IPR003340 GO:0003677
Bach10g01507 873 SUPERFAMILY DNA-binding pseudobarrel domain 249 346 IPR015300 -
Bach10g01507 873 ProSiteProfiles B3 DNA-binding domain profile. 253 344 IPR003340 GO:0003677
Bach10g01507 873 ProSiteProfiles B3 DNA-binding domain profile. 10 103 IPR003340 GO:0003677
Bach10g01507 873 Coils Coil 114 134 - -
Bach10g01507 873 ProSitePatterns Ribosomal protein S17 signature. 835 847 IPR019979 GO:0003735|GO:0005840|GO:0006412
Bach10g01507 873 ProSiteProfiles B3 DNA-binding domain profile. 397 498 IPR003340 GO:0003677
Bach10g01507 873 FunFam 40S ribosomal protein S11 715 872 - -
Bach10g01507 873 CDD B3_DNA 252 342 IPR003340 GO:0003677
Bach10g01507 873 Gene3D - 704 872 - -
Bach10g01507 873 ProSiteProfiles B3 DNA-binding domain profile. 595 691 IPR003340 GO:0003677
Bach10g01507 873 NCBIfam 30S ribosomal protein S17 768 857 IPR028333 -
Bach10g01507 873 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 375 498 IPR044837 -
Bach10g01507 873 Pfam Ribosomal protein S17 788 856 IPR000266 GO:0003735|GO:0005840|GO:0006412
Bach10g01507 873 PRINTS Ribosomal protein S17 family signature 835 845 IPR000266 GO:0003735|GO:0005840|GO:0006412
Bach10g01507 873 PRINTS Ribosomal protein S17 family signature 845 852 IPR000266 GO:0003735|GO:0005840|GO:0006412
Bach10g01507 873 PRINTS Ribosomal protein S17 family signature 802 825 IPR000266 GO:0003735|GO:0005840|GO:0006412
Bach10g01507 873 Pfam Ribosomal_S17 N-terminal 718 786 IPR032440 -
Bach10g01507 873 SUPERFAMILY DNA-binding pseudobarrel domain 589 691 IPR015300 -
Bach10g01507 873 Pfam B3 DNA binding domain 399 497 IPR003340 GO:0003677
Bach10g01507 873 Pfam B3 DNA binding domain 24 102 IPR003340 GO:0003677
Bach10g01507 873 Pfam B3 DNA binding domain 253 341 IPR003340 GO:0003677
Bach10g01507 873 Pfam B3 DNA binding domain 595 689 IPR003340 GO:0003677
Bach10g01507 873 SUPERFAMILY DNA-binding pseudobarrel domain 10 110 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach10g01507 Bach-Chr10 15958471 15965200 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach10g01507 715 873 Cytoplasmic Ribosomal Protein Gene Family AT5G23740 88.679 2.35e-88 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Bach10g01507 B3 2e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach10g01507 K02949 - pcin:129304822 344.739