LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bach10g01422	CTCCCACTTAACTCCCTTCTCCGAAGGCTTTGCTCGACTCTTTGCTTGATTCAGGTCATTTCCTTCTCAAATTCTGGGAATTGGGATTTGTTTGAAGTGGAATTGTTCATAATAGTCATGGTGAAACCAACCCAGAATGGGTCTGATTCTGTGCCGCCTTTCCTGAAGAAATGCTATGAGATGGTTGACGATGAGTCCACGGACTTGATTATATGTTGGAGCCAAAGCAACGACAGTTTTGTTATCTCGGATATGACTGAATTTTCTGTCAAATTGCTTCCAAAGTTTTTCAAGCACAACAATTTCTCCAGCTTCATCAGGCAACTCAATATTTATGGATTCCGGAAAATTGATACAGATCGTTGGGAGTTTTACAATGAAGGATTTGTCAGAGGTCAGAAGCATTTGTTGAAGAATATAACTAGAAGGAAACATCCACAAGTTGCAGATCAGAAAACAACATTGCAGCAGCAAGATAACTGTGATGAAAATTCCCAAGAAGTTGCAAATCATGGGCTCTGGAAAGAGGTTGAAAATCTCAAAATTGGTAAAAATGCACTCACACAGGAGTTGGTTAAACTTGGGCAGCACCAGGAGTCTTCAAAGAACAGGCTATTGCTACTGGGGGATCAACTTGAAGTAATGGAAAAAGATCAGCAGCAGATGTTATCATTCTTAGTCATGGCCATGCAAAGCGGGATTTTAGTTCAACTGCTTCAGTCTAAGGAACATAATTGGCGCATGGCTGAAGCACGGAATATGTTGGAACAAATTGAACAAGATGACAAACAAGTTGCCTCAGATGGGATGATAGTAAAGTATACATCACATGTGGGTGAGAAGTTAAAGCCTGTAGTTACACCCTCTTTTGTCTCAGATAAGCAAACAGAAGCTGATATCTCTGCAACTGATAGATTCAAAGATATTTTCATCAATTCTGAGTTTTTAAAAGTACTCATGGATGAAGAATTGTGTCAAGCGGATCATCAGTCTCCATTTATTCTACCAGATTCACCTGATGATGGTGAATGGGAACAGCTTCTTTTAGGTAGTCCTTTCGTTGAAAACGCTGAAGATTCGAAGCAGGAAAATGAGGAACACACAAATAGTGGCATGGAGATGGAAACTGCTACAATTGAAATTACAAATGAGAAATCTAAAGATTTTGAGTCACTGATTGCAGAAATGGAGAAAACTCAAAAGAAGGGGTCGGAAGAACATGCCAATGGAGTATGA	1236	0.3972	MVKPTQNGSDSVPPFLKKCYEMVDDESTDLIICWSQSNDSFVISDMTEFSVKLLPKFFKHNNFSSFIRQLNIYGFRKIDTDRWEFYNEGFVRGQKHLLKNITRRKHPQVADQKTTLQQQDNCDENSQEVANHGLWKEVENLKIGKNALTQELVKLGQHQESSKNRLLLLGDQLEVMEKDQQQMLSFLVMAMQSGILVQLLQSKEHNWRMAEARNMLEQIEQDDKQVASDGMIVKYTSHVGEKLKPVVTPSFVSDKQTEADISATDRFKDIFINSEFLKVLMDEELCQADHQSPFILPDSPDDGEWEQLLLGSPFVENAEDSKQENEEHTNSGMEMETATIEITNEKSKDFESLIAEMEKTQKKGSEEHANGV	372

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bach10g01422	372	SMART	hsfneu3	11	104	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Bach10g01422	372	MobiDBLite	consensus disorder prediction	315	372	-	-
	Bach10g01422	372	Pfam	HSF-type DNA-binding	15	104	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Bach10g01422	372	Coils	Coil	202	222	-	-
	Bach10g01422	372	MobiDBLite	consensus disorder prediction	341	372	-	-
	Bach10g01422	372	FunFam	Heat shock transcription factor 1	8	105	-	-
	Bach10g01422	372	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	9	223	IPR027725	-
	Bach10g01422	372	SUPERFAMILY	"Winged helix" DNA-binding domain	11	104	IPR036390	-
	Bach10g01422	372	ProSitePatterns	HSF-type DNA-binding domain signature.	54	78	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Bach10g01422	372	Gene3D	-	7	105	IPR036388	-
	Bach10g01422	372	PRINTS	Heat shock factor (HSF) domain signature	53	65	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Bach10g01422	372	PRINTS	Heat shock factor (HSF) domain signature	66	78	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Bach10g01422	372	PRINTS	Heat shock factor (HSF) domain signature	15	38	IPR000232	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bach10g01422	Bach-Chr10	13675033	13678295	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bach10g01422	12	325	HSF	AT1G67970	49.057	2.85e-85	261

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Bach10g01422		HSF_DNA-bind	1.1e-30	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bach10g01422	K09419		-	gmx:100813694	486.493