Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach10g01274 ATGTTCAACCAAATCAAGAAAACTGCAACTGGCCAAGGACGCAAGAGGATTGAGATCAAAGAGCTCGATAAGGGTGCTAGCAAGCAAGTCACTTTCTCGAAGCGCCGTGCCGGCTTGTTCAAGAAAGCCAGCGAGCTTTGCATCTTATGCAACACTCAACTCGCCATCATTGTGTTCTCTCCTGCTGGTAAACCCTTCTGCTTTGGCCAACCCAAGGCCGAAGCCGTCCTGGGTCGCTACCTCAAAGGAACATTAACTTCGGAGCTGTCTGAGGCGCCGTCCATAGCGGTGGTAGACAATTTCTTGTCCCACGGAGAACTGAATAGGCAGTACGTAGAGGCCACCAAGGTGTTGGAATTTGAGAGGAAGCGCATAGAGGAGATTGAAAACCTAGCCAACGTGTGGGACAAAGGAAACTGGTGGGACGAGCCCATTGATGAGATGGGTGTGGAGCAGTTGGAGCAATATGCAGTGGCCATGAACGAGTTGAGGAGAAAGTTAGCTGAGAGAGCAGATGAGTTGATGATTAGGTTTGCAGGGCTGCCTCATGGGGCAAACCCCTGTGGTGCTATGGGTGCAATCAATTTTACTGGTTTTTTCAACCAGTTTGGTGGTAGAAATTTTAGATTTTGA 633 0.4929 MFNQIKKTATGQGRKRIEIKELDKGASKQVTFSKRRAGLFKKASELCILCNTQLAIIVFSPAGKPFCFGQPKAEAVLGRYLKGTLTSELSEAPSIAVVDNFLSHGELNRQYVEATKVLEFERKRIEEIENLANVWDKGNWWDEPIDEMGVEQLEQYAVAMNELRRKLAERADELMIRFAGLPHGANPCGAMGAINFTGFFNQFGGRNFRF 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach10g01274 210 FunFam Agamous-like MADS-box protein AGL62 24 89 - -
Bach10g01274 210 SMART madsneu2 12 71 IPR002100 GO:0003677|GO:0046983
Bach10g01274 210 Coils Coil 111 131 - -
Bach10g01274 210 Coils Coil 150 173 - -
Bach10g01274 210 ProSiteProfiles MADS-box domain profile. 12 72 IPR002100 GO:0003677|GO:0046983
Bach10g01274 210 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 26 68 IPR002100 GO:0003677|GO:0046983
Bach10g01274 210 SUPERFAMILY SRF-like 13 87 IPR036879 GO:0003677|GO:0046983
Bach10g01274 210 PRINTS MADS domain signature 14 34 IPR002100 GO:0003677|GO:0046983
Bach10g01274 210 PRINTS MADS domain signature 34 49 IPR002100 GO:0003677|GO:0046983
Bach10g01274 210 PRINTS MADS domain signature 49 70 IPR002100 GO:0003677|GO:0046983
Bach10g01274 210 Gene3D - 26 94 IPR036879 GO:0003677|GO:0046983
Bach10g01274 210 PANTHER MADS BOX PROTEIN 14 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach10g01274 Bach-Chr10 10064350 10064982 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach10g01274 13 168 Type I MADS-box Gene Family AT2G24840 42.138 4.55e-36 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Bach10g01274 SRF-TF 5.7e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach10g01274 - - pcin:129286086 221.861