Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach10g01128 ATGGGAAGGGGTAGGGTTCAGTTGAAGATGATAGAGAACAAGATCAATCGTCAGGTAACATTTTCCAAAAGGAGAGGTGGGTTGATCAAGAAAGCGCATGAGATCTCTGTTCTCTGTGATGCTGAGGTCGCTTTGATTGTTTTTTCTCACAAAGGAAAGCTCTTTGAATATGCCACTGACTCTTGCATGGAGAAGATACTGGAACGCTATGAAAGGTATGCCTATGCAGAGAGACAGCTTGTGGGAAATAATTCCGAGACGCAGGAAAACTGGACCATTGAGTATACAAGACTCAAGGCTAAGATTGACCTTCTGCAGAGGAACCAGAGGCACTATATGGGGGAGGATTTGGGTTCATTGAGCCTGAAGGAGCTTCAAAATCTGGAACAACAGTTAGATACTTCTCTCAAACAGATCAGGATGCGCAAAAACCAACTCATGCACGAGTCCATTTCTGAGCTACAGAAAAAGGAGAAAGTGATTCTGGAGCAGAATAACATGCTAGCAAAGATCGTGGAGAAAGAGAAAGCTGTAGCCCACCACGCTCAGTGGGAGCAAACAAACCATGGACCTAATGCACCTTTCTTACTACCACCAATTTCCAGCTTGAACAAAGGTGGAGCTTACAGAGAGGATGCACCAGAAGTTATGAGGAACGAGCTTGACCTGACCCTTGAACCACTGTATACATGCCATCTTGGCTGCTTTGCTGCATGA 717 0.4505 MGRGRVQLKMIENKINRQVTFSKRRGGLIKKAHEISVLCDAEVALIVFSHKGKLFEYATDSCMEKILERYERYAYAERQLVGNNSETQENWTIEYTRLKAKIDLLQRNQRHYMGEDLGSLSLKELQNLEQQLDTSLKQIRMRKNQLMHESISELQKKEKVILEQNNMLAKIVEKEKAVAHHAQWEQTNHGPNAPFLLPPISSLNKGGAYREDAPEVMRNELDLTLEPLYTCHLGCFAA 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach10g01128 238 SUPERFAMILY SRF-like 2 92 IPR036879 GO:0003677|GO:0046983
Bach10g01128 238 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bach10g01128 238 Coils Coil 122 145 - -
Bach10g01128 238 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bach10g01128 238 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Bach10g01128 238 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Bach10g01128 238 Coils Coil 88 108 - -
Bach10g01128 238 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bach10g01128 238 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bach10g01128 238 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bach10g01128 238 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
Bach10g01128 238 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bach10g01128 238 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 166 - -
Bach10g01128 238 Pfam K-box region 85 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bach10g01128 238 FunFam Floral homeotic protein APETALA 1 13 68 - -
Bach10g01128 238 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach10g01128 Bach-Chr10 8376469 8380377 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach10g01128 1 238 MADS-box Gene Family AT1G26310 62.109 5.26e-102 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Bach10g01128 K-box 4.4e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach10g01128 K09264 - gmx:100810129 392.504