Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach10g01016 ATGACTAAATACAGTATTGCCTTGCATGCTTTCTTATTCTTGTCCAGTTTTGTTACCACCCTGCATGGTAGTGAATTGGAAAGCGAGAAATTCTGGAAAGACGAATCAAAATCATATGATTCTTATTGGCAGCAAAGAGCAAAGAATGCTGAAGAGGCCAACACAAAAGCTGCTGTTGCTGACCCCTTTGAAGTCACTGCTAACCTCTCCACTAATATTAACGAGGTTCTAAGCAGTAGCAAGACCAGGAGCGGAAGGATGTTGTTGAGAGGGCGTAAAGGTAAACAAGGTCCATGCGAGGCCTTCAACCCCATTGACAAATGCTGGAGGTGCGATCCCAACTGGGAACAAAACAGGCAAAGGCTCGCAGATTGTGCCCAGGGATTTGGCAGGAAAACCACTGGTGGAAAGGGTGGAAAAATCTATGTAGTCACTGATCCCTCAGACAATGATATGTTGAATCCCAAACCTGGCACCCTTCGCCACGCAGTTATACAGACAGAGCCATTGTGGATCATCTTTGCTCGCAGCATGATGATTTATCTGAAGCAGGAGCTTATAATGACTTCTAGCAAAACCATTGATGGTAGAGGAGCCAATGTTCATATTGCTGGTGGTGCTGGTATTACCATCCAGTTCATTGAGAATGTGATCATCCATGGGATTCATATTCATGACATTGTACCTAAAGATGGTGGAATGATTAGAGATTCTGTTGATCATTTTGGTCTTAGGACTAGGAGTGATGGTGATGCTATTTCCATCTTCGGCTCCAACCATGTTTGGATTGACCATTGCTCATTGTCCAAAGCCAAAGATGGACTCATTGATGCAATTATGGGATCCACTGCTATTACCATCTCCAACAACCAATTTGCAAAACATGATGAGGTGATGTTGTTTGGTGCCAGCGACAGCTACGCCGGAGATGAAAAAATGCAAATCACAGTGGCATTCAACAACTTTGGTCATGGATTAATCCAAAGGATGCCAAGGTGTAGATGGGGTTTCTTCCATGTGGTTAACAATTACTACACTCATTGGCTAAAGTATGCCCTTGGTGGTAGCATGCATCCTACCATCATTAGTGAGGGTAACCGATTCATTGCCCCAGATGACAGATTTCTTAAAGAGGCTACAATGAGAGTCCTTACCCCAAAGAGCGAGTGGGAAAAATGGCAGTGGAGATCAATTGGTGATGAATTCCTCAATGGTGCATTTTTCACACAATCTGGGCCTGAGGTTGTGAAGGAGAAATCTCAATACGCTCAGGATATGATCATTGCTAATCCTGTGAAATATGTGGATAGGCTCACTCTAAATGCCGGCACACTAGCATGCAAAGTTGGTCAGCCTTGTTAG 1362 0.4391 MTKYSIALHAFLFLSSFVTTLHGSELESEKFWKDESKSYDSYWQQRAKNAEEANTKAAVADPFEVTANLSTNINEVLSSSKTRSGRMLLRGRKGKQGPCEAFNPIDKCWRCDPNWEQNRQRLADCAQGFGRKTTGGKGGKIYVVTDPSDNDMLNPKPGTLRHAVIQTEPLWIIFARSMMIYLKQELIMTSSKTIDGRGANVHIAGGAGITIQFIENVIIHGIHIHDIVPKDGGMIRDSVDHFGLRTRSDGDAISIFGSNHVWIDHCSLSKAKDGLIDAIMGSTAITISNNQFAKHDEVMLFGASDSYAGDEKMQITVAFNNFGHGLIQRMPRCRWGFFHVVNNYYTHWLKYALGGSMHPTIISEGNRFIAPDDRFLKEATMRVLTPKSEWEKWQWRSIGDEFLNGAFFTQSGPEVVKEKSQYAQDMIIANPVKYVDRLTLNAGTLACKVGQPC 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach10g01016 453 PANTHER PECTATE LYASE 18-RELATED 61 451 IPR045032 GO:0030570
Bach10g01016 453 SMART amb_all 177 374 IPR002022 -
Bach10g01016 453 Pfam Pectate lyase 185 368 IPR002022 -
Bach10g01016 453 SUPERFAMILY Pectin lyase-like 97 443 IPR011050 -
Bach10g01016 453 PRINTS Pollen allergen Amb family signature 125 142 IPR018082 -
Bach10g01016 453 PRINTS Pollen allergen Amb family signature 185 201 IPR018082 -
Bach10g01016 453 PRINTS Pollen allergen Amb family signature 351 370 IPR018082 -
Bach10g01016 453 PRINTS Pollen allergen Amb family signature 424 447 IPR018082 -
Bach10g01016 453 PRINTS Pollen allergen Amb family signature 393 417 IPR018082 -
Bach10g01016 453 PRINTS Pollen allergen Amb family signature 149 174 IPR018082 -
Bach10g01016 453 PRINTS Pollen allergen Amb family signature 249 270 IPR018082 -
Bach10g01016 453 PRINTS Pollen allergen Amb family signature 329 348 IPR018082 -
Bach10g01016 453 Gene3D - 102 446 IPR012334 -
Bach10g01016 453 Pfam Pectate lyase, N terminus 38 86 IPR007524 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach10g01016 Bach-Chr10 7343445 7345623 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach10g01016 9 453 Polysaccharide Lyase AT1G14420 53.509 1.85e-174 495
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach10g01016 K01728 - gmx:100796307 546.584