Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach10g01015 ATGGGAAGATTAGATAGTATCTTTCTTGCTTTCTTCTTCGTGTCCTGTTTGGTGGCCACCTTGCATGGCAACGTGTTGGAAACTCAAGAGTATTGGGAAGAGCAAACTAAATCTTTTGATGGGTATTGGAAGCAAAGAGCCCAGGAAGCTGAAAAGATCAACGAAAAAGCTGTTGTTGCCGATCCATACGAAGTCACTGCCAGCCTCTCCTCTAGCGTTAACCTGGTCCTAGGTACTAGCCATAACAAGAATGGCACAAGAAAGTTGCTGGGGAAAAATAAAGGTCTAGCATGCGAGGCCTTCAACCCCATTGACAAGTGCTGGAGGTGTAATCCCAACTGGGCTGAAAACCGGCAAAGACTTGCAGATTGCGCAATGGGATTTGGCAGGAAAACCACTGGTGGAAAAGGTGGGAAAGTCTATGTGGTAACAGATTCATCAGACAATGATTTGGTGAATCCCAAGCCAGGGACCCTTCGTCATGCAGTTATACAAAATGAGCCATTATGGATCATCTTTGCCACAAGCATGGTGATCAGGCTGAGCGAGGAGCTGATAGTGACTTCCCACAAAACCATTGATGGCAGAGGAGTCAAAGTTCACATTTCTGGTGGTGCTGGCATTACCCTCCAGTTTGTAGAGAATGTGATCATCCATGGGGTTTATATTCATGATATTCATCCTGGCAAGGGTGGAACGATTGCAAGTTCTGTCAACCATACTGGTATAAGGACTAGGAGTGATGGTGATGGAATCAACATCTTTGGCTCCAGCCGTATTTGGATTGATCATTGCTCAATGAGAAGCTGTTATGATGGACTAATTGATGCTGTTTCTGGATCCACTGCTATTACCTTATCCAACAATCATTTCACAGATCACAATGAGGTGATGCTATTTGGTGCCAGCGGCATGGACACCAGGGACCAGAATATGCAAATCACAGTGGCATTCAACCACTTTGGCAAGAACTTGATCCAAAGGATGCCAAGGTGCAGATTCGGTTTCATCCATGTGGTTAACAACGACTACACTCATTGGGAAATGTATGCCATTGGTGGAAGCAATAAACCTACCATCATTAGTGAGGGTAACCGATTCATTGCCCCTGATAACCCCCATGCTAAAGAGGTCACAAAGAGAGACTACGCATATGAGAGCGAGTGGAAAAATTGGCAATGGAGATCAATAAATGATGTATTCATGAATGGGGCATTTTTTGTACAATCTGGACCTCAAGTAATCAGAGAACCATCAATTTCACAGAACGACTTGATCAGTGCTTATCCTAGCACAATGGTGAACAAGCTCACACAATATGCCGGCACCCTGAATTGCATAGTGGGTAGCCCATGTTAG 1359 0.4467 MGRLDSIFLAFFFVSCLVATLHGNVLETQEYWEEQTKSFDGYWKQRAQEAEKINEKAVVADPYEVTASLSSSVNLVLGTSHNKNGTRKLLGKNKGLACEAFNPIDKCWRCNPNWAENRQRLADCAMGFGRKTTGGKGGKVYVVTDSSDNDLVNPKPGTLRHAVIQNEPLWIIFATSMVIRLSEELIVTSHKTIDGRGVKVHISGGAGITLQFVENVIIHGVYIHDIHPGKGGTIASSVNHTGIRTRSDGDGINIFGSSRIWIDHCSMRSCYDGLIDAVSGSTAITLSNNHFTDHNEVMLFGASGMDTRDQNMQITVAFNHFGKNLIQRMPRCRFGFIHVVNNDYTHWEMYAIGGSNKPTIISEGNRFIAPDNPHAKEVTKRDYAYESEWKNWQWRSINDVFMNGAFFVQSGPQVIREPSISQNDLISAYPSTMVNKLTQYAGTLNCIVGSPC 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach10g01015 452 Gene3D - 101 445 IPR012334 -
Bach10g01015 452 Pfam Pectate lyase, N terminus 38 88 IPR007524 GO:0030570
Bach10g01015 452 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 16 - -
Bach10g01015 452 SUPERFAMILY Pectin lyase-like 102 443 IPR011050 -
Bach10g01015 452 SMART amb_all 176 373 IPR002022 -
Bach10g01015 452 Pfam Pectate lyase 187 367 IPR002022 -
Bach10g01015 452 PRINTS Pollen allergen Amb family signature 124 141 IPR018082 -
Bach10g01015 452 PRINTS Pollen allergen Amb family signature 184 200 IPR018082 -
Bach10g01015 452 PRINTS Pollen allergen Amb family signature 392 416 IPR018082 -
Bach10g01015 452 PRINTS Pollen allergen Amb family signature 350 369 IPR018082 -
Bach10g01015 452 PRINTS Pollen allergen Amb family signature 148 173 IPR018082 -
Bach10g01015 452 PRINTS Pollen allergen Amb family signature 423 446 IPR018082 -
Bach10g01015 452 PRINTS Pollen allergen Amb family signature 328 347 IPR018082 -
Bach10g01015 452 PRINTS Pollen allergen Amb family signature 248 269 IPR018082 -
Bach10g01015 452 PANTHER PECTATE LYASE 18-RELATED 53 450 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach10g01015 Bach-Chr10 7333246 7335607 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach10g01015 4 452 Polysaccharide Lyase AT1G14420 54.741 1.03e-180 511
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach10g01015 K01728 - gmx:100810857 571.237