Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach10g00871 ATGGCGAGGGAGAAGATTCAAATTAAGAAGATTGACAACGCCACGGCGAGGCAGGTGACGTTCTCAAAGAGACGCAGAGGGCTTTTCAAAAAAGCTGAGGAGCTTTCTATCCTCTGTGACGCAGATGTTGCTCTTATTATCTTCACTACTGGGAAGGTCTTCGACTATGCCAGCTCAAGCATGAAGGAAATACTAGAAAGGCATCATCTGCACTCAAAGAACCTGGCAAAGCTGGAACAACCGTCTCTTGAGTTGCAGCTAGTTGAGAACGGCAACCACTCCAGATTGAGCAAGGAAGTTGCTGAAAAGAGCCATAGACTCAGGCAGATGAGAGGAGAGGATCTGCATGGCTTAAATATAGAGGATATACAGCAACTAGAGAGGACTCTGGAAGTAGGGTTGGGCCGTGTAATAGAAAAGAAGGGAGAGAAGATTATGAATGAAATCAGTGAACTTCAAAGAAAGGTTAGAATCTGCTTGTATTTGCATGTTGAACTCAAGGTGGAGAAAATATCTAATGGCAGAAGCGGTGGTGATGGCGATCAGTTCGACAACTTGATTATCGAGGAAGGTCAGTCGTCGGAGTCTATCACTAATGTTTGCAACTCCGGTGGACCTCCTCAAGATTATGATAGCTCAGACACCTCACTCAAGTTGGGGCTACCTTACGCGGGTTGA 678 0.4572 MAREKIQIKKIDNATARQVTFSKRRRGLFKKAEELSILCDADVALIIFTTGKVFDYASSSMKEILERHHLHSKNLAKLEQPSLELQLVENGNHSRLSKEVAEKSHRLRQMRGEDLHGLNIEDIQQLERTLEVGLGRVIEKKGEKIMNEISELQRKVRICLYLHVELKVEKISNGRSGGDGDQFDNLIIEEGQSSESITNVCNSGGPPQDYDSSDTSLKLGLPYAG 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach10g00871 225 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Bach10g00871 225 SMART madsneu2 1 59 IPR002100 GO:0003677|GO:0046983
Bach10g00871 225 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 56 IPR002100 GO:0003677|GO:0046983
Bach10g00871 225 Pfam K-box region 92 163 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bach10g00871 225 SUPERFAMILY SRF-like 3 80 IPR036879 GO:0003677|GO:0046983
Bach10g00871 225 ProSiteProfiles MADS-box domain profile. 1 60 IPR002100 GO:0003677|GO:0046983
Bach10g00871 225 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 164 - -
Bach10g00871 225 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bach10g00871 225 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bach10g00871 225 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bach10g00871 225 ProSiteProfiles K-box domain profile. 86 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bach10g00871 225 Gene3D - 14 75 IPR036879 GO:0003677|GO:0046983
Bach10g00871 225 FunFam Transcription factor, MADS-box 13 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach10g00871 Bach-Chr10 6150716 6152926 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach10g00871 1 225 MADS-box Gene Family AT2G22540 64.167 4.15e-103 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Bach10g00871 K-box 6.1e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach10g00871 - - gmx:100789126 331.643