Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach10g00840 ATGACTTCCAATGGCAGAAGAGGTTTAAGGGATATTAAGAATACTACGGGACCCACTTCTTCTCTCGCTGCAGTCAAGCTCAATGACGAAGATGATCAACAGGTTAGACCATGGTTTTGGAAAAAGAGATATATAAGAATAATTGTAAGATTTATTTTCTGGCTTAACAGAAATAGTCCGACGTCGTTTCAGGTGGTTATAGACAACGGCATCGTTCGCGTCACTTTGTCAACGCCGGATGGCTATGTGCTCGGAATATCATATAATGGTATTGACAACGTACTTGAAGCTAACGAAGATAATGATAGAGGGTATTTGGACGTTGTTTGGAATGAACCAGAAAGTAAAAGTAACTTTCAGAGAATCACAGGCACTGAATTTTCGGTGATAGTAGCAAACGATGACCAAGTAGAGCTTTCATTTTCAAGGAACTGGACATCTTCCATGAAAGGCTCGAGTGTCCCTATAAACATAGACAAAAGGTATGTATTTCGTAGAGGTGATTCAGGATTTTATGCATATGCAATATTTGAACGCTTAGAAGGAATGCCAGCAGTGGAGGTCGATCAAATTAGGATTGTCTTCAAGCTTCAGGAAAACAGGTTCCAATACATGGCTTTATCAGACACTAGGCAAAGGAACATGCCAACCATGGAAGATAGAAACAGAGGGCAGCCCCTTGCATACCCTGAAGCTGTTCTCTTAACTGAGCCAAGTCACGCAGAATTTAGAGGAGAGGTGGATGACAAGTACCAATATTCAATTGAGAACAAAGACAACTCTGTTCACGGATGGATTAGCCTCAGCTCTGATTCACCCGTGGGCTTCTGGATAGTAACACCCAGCAATGAATTCCGTAATGCTGGACCCATCAAGCAAGACCTCACCTCCCATGTTGGCCCCATCGCCCTCTCCATGTTTGTCAGCACCCACTATGCTGGGAAGGAGGTGACTATGGCGTTTGAACAAGGGGAAACTTATAAAAAGGTTTTTGGCCCTGTTTTTGTCTACCTCAACTCTGCTTCAAACGACAGTAACACTGTTTCACAACAACTTTGGACAGATGCTGTACAACAGATGTCTAAGGAAACCAAAAGCTGGCCCTATGATTTCCCACAGTCACAAGATTTCATTCCACCGGAGCAACGTGGAACTGTCATGGGACGATTAATAGTCCAGGATGGGTACATCAAAGGAGGGAGATTTCTATATGCTAACTCTGCTTATATTGGTCTTGCTCTGCCTGGAGAACCGGGATCATGGCAGAAAGAGAGCAAGGGTTACCAGTTCTGGGCTCAAGCTGACAAAAGGGGCTATTTCGTACTAAAGAACATAGTACCTGGGGACTATAATTTGTATGCATGGGTTCCTGGGTTTCTCGGTGATTACAAATACAAAGCTAACGTAACCATCACACCAGGTGTTTTCATCAAATTAGGTTCACTTATATATAACCCTCCAAGAAATGGCGCTACTGTTTGGGAAATTGGCATCCCAGATCGTTCAGCGGCAGAGTTCCATGTACCAGATCCTTACCCTACCCTCATGAACAAATTATACAATGACCAGAACAAAGAAAGGTTTAGGCAATACGGTTTGTGGGAACGTTACACTGATCTTTATCAGAATAGTGACCTCGTTTACACCATCGGTGTTAATAATTATCACAGAGACTGGTTCTACGCTCATGTTACCAGGAGTACAGGAAATAAGACGTATGAATCAGCAACATGGCAGATAGTTTTTGGTCTTCCAAACGTAGCAGAGAGTGGAAACTACACACTGCAACTAGCCTTGGCAGCAGCCGCAGACTCTGACTTGCAGGTTCGGTTCAATGATCCAAGTGTTCTACCTGCTCACTTTTCTACGGGTCCAACAGGCAAAGACAACGCCATAGCAAGGCACGGTATCCATGGATTGCATTGGCTGTTCAGCATTGATGTGCCCAGCAGTCGATTAGTAGAAGGAAACAACACCATTTATCTGAGACAGTCCAAAGCCATAAACGCTTTCCAAGGAGTTATGTATGATTATATCCGTTTAGAAACACCCCCATCTCAGAGGACTTAG 2070 0.4357 MTSNGRRGLRDIKNTTGPTSSLAAVKLNDEDDQQVRPWFWKKRYIRIIVRFIFWLNRNSPTSFQVVIDNGIVRVTLSTPDGYVLGISYNGIDNVLEANEDNDRGYLDVVWNEPESKSNFQRITGTEFSVIVANDDQVELSFSRNWTSSMKGSSVPINIDKRYVFRRGDSGFYAYAIFERLEGMPAVEVDQIRIVFKLQENRFQYMALSDTRQRNMPTMEDRNRGQPLAYPEAVLLTEPSHAEFRGEVDDKYQYSIENKDNSVHGWISLSSDSPVGFWIVTPSNEFRNAGPIKQDLTSHVGPIALSMFVSTHYAGKEVTMAFEQGETYKKVFGPVFVYLNSASNDSNTVSQQLWTDAVQQMSKETKSWPYDFPQSQDFIPPEQRGTVMGRLIVQDGYIKGGRFLYANSAYIGLALPGEPGSWQKESKGYQFWAQADKRGYFVLKNIVPGDYNLYAWVPGFLGDYKYKANVTITPGVFIKLGSLIYNPPRNGATVWEIGIPDRSAAEFHVPDPYPTLMNKLYNDQNKERFRQYGLWERYTDLYQNSDLVYTIGVNNYHRDWFYAHVTRSTGNKTYESATWQIVFGLPNVAESGNYTLQLALAAAADSDLQVRFNDPSVLPAHFSTGPTGKDNAIARHGIHGLHWLFSIDVPSSRLVEGNNTIYLRQSKAINAFQGVMYDYIRLETPPSQRT 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach10g00840 689 CDD RGL4_C 494 682 - -
Bach10g00840 689 CDD RGL4_M 382 482 IPR029413 -
Bach10g00840 689 Gene3D - 56 360 IPR014718 GO:0030246
Bach10g00840 689 Pfam Polysaccharide lyase family 4, domain III 492 681 IPR029411 -
Bach10g00840 689 Pfam Polysaccharide lyase family 4, domain II 406 474 IPR029413 -
Bach10g00840 689 Gene3D - 378 477 - -
Bach10g00840 689 SUPERFAMILY Galactose-binding domain-like 489 682 IPR008979 -
Bach10g00840 689 CDD RGL4_N 61 347 - -
Bach10g00840 689 Pfam Rhamnogalacturonate lyase family 63 247 IPR010325 -
Bach10g00840 689 SUPERFAMILY Galactose mutarotase-like 72 349 IPR011013 GO:0003824|GO:0005975|GO:0030246
Bach10g00840 689 SUPERFAMILY Starch-binding domain-like 378 478 IPR013784 GO:0030246
Bach10g00840 689 FunFam Rhamnogalacturonate lyase B 379 479 - -
Bach10g00840 689 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 60 685 - -
Bach10g00840 689 Gene3D - 489 682 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach10g00840 Bach-Chr10 5951928 5955354 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach10g00840 64 684 Polysaccharide Lyase AT1G09890 56.250 0.0 734
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach10g00840 K18195 - gmx:100776664 965.681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bach4g01029 4 6960262 6963984 Bach10g00840 10 5951928 5955354 BWGD