LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bach10g00838	ATGACTACTGATCTTGCTTTGGCATCTATCAAAAACCCTAAAGCTGAAAGAATGGGAAGAGGGAAGATTGTGATTCGAAGGATCGACAATTCTACCAGCAGGCAAGTGACTTTCTCAAAGAGAAGAAAGGGATTGATCAAGAAAGCAAAAGAGCTAGCAATCCTGTGTGATGCAGAAGTTGGACTGATGATATTTTCAACTACTGGAAAGCTTTATGAATATTCAAGTACCAGTATGAAATCTGTGACTGAGAGATATAACACGTACAAGGAAGAACATCAACAACTGACGAGTCCAGAATCAGAAGTCAAGGTTAGCTCTGTAAACTACTCTTCATTATTGTCTCATGCCTTTTCTGGCATAAAAAATAGCCAAATGCAAAAGCTTGTCAAAACCAGTTATGAAGATCCTGCAGCTGTAGAAGATGTTGGAGCTGTTCAACTTGAGGAATTAAAGAGGAAAAGATTCATGGATGCTGGAGTTCTTGGGATGATTCAAAGAGGAGTCTCATCAACCATATTTCCAAGAATTATGAGAGCAAGGACAGCCAAGGAAGTATGGGAAACTCTACAACAAGAGGTTGAAGGAGACTCAAAGGTGAGAACAGTTAAACTTCAATCTCTTAAAAGAGATTTTGAAAATGAGAAAATGAAGGAGAATGAAAGCTTGAATGAGTTTTTCAATAGACTATCTGAATTATTCGATCAAATGAAGTCACATGGAGATACCATTGATGATTGGAGAATTGTTGATAAAATTCTCATTAGCTTATCTGAAAAATTTGATCTCATGGTAGCTGTTATAGAAGAAACAAAGGATTTGTCAACCATGACCGTCCAAGGATTGATGGGTTCTCTAAGGTCATATGGGCAAAGATTGTTAAGGCGCATTGAAAAATCTGTTGAAAGCGCATTTCAATCTAAGCTCAACCTTGAGAACAAATTCTCAACACAAAATAAAAGTGAGTCTCATAGAGGTGGCAGATTTGGAAGAGGCAGAGGAAGAGGAAGAAACTCGTGTGGAGAAGGAAGAAATACCTATGGCAGAGGAGGAAATGATGAAGGCTCAAATAAATGGTGCAGAATTTGCAAGAAGAACACTCATGAAGAGAAAGATTGCTAG	1122	0.3806	MTTDLALASIKNPKAERMGRGKIVIRRIDNSTSRQVTFSKRRKGLIKKAKELAILCDAEVGLMIFSTTGKLYEYSSTSMKSVTERYNTYKEEHQQLTSPESEVKVSSVNYSSLLSHAFSGIKNSQMQKLVKTSYEDPAAVEDVGAVQLEELKRKRFMDAGVLGMIQRGVSSTIFPRIMRARTAKEVWETLQQEVEGDSKVRTVKLQSLKRDFENEKMKENESLNEFFNRLSELFDQMKSHGDTIDDWRIVDKILISLSEKFDLMVAVIEETKDLSTMTVQGLMGSLRSYGQRLLRRIEKSVESAFQSKLNLENKFSTQNKSESHRGGRFGRGRGRGRNSCGEGRNTYGRGGNDEGSNKWCRICKKNTHEEKDC	373

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bach10g00838	373	Coils	Coil	294	314	-	-
	Bach10g00838	373	PRINTS	MADS domain signature	40	55	IPR002100	GO:0003677\|GO:0046983
	Bach10g00838	373	PRINTS	MADS domain signature	55	76	IPR002100	GO:0003677\|GO:0046983
	Bach10g00838	373	PRINTS	MADS domain signature	20	40	IPR002100	GO:0003677\|GO:0046983
	Bach10g00838	373	ProSitePatterns	MADS-box domain signature.	20	74	IPR002100	GO:0003677\|GO:0046983
	Bach10g00838	373	SUPERFAMILY	SRF-like	19	101	IPR036879	GO:0003677\|GO:0046983
	Bach10g00838	373	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	27	74	IPR002100	GO:0003677\|GO:0046983
	Bach10g00838	373	SMART	madsneu2	18	77	IPR002100	GO:0003677\|GO:0046983
	Bach10g00838	373	Pfam	gag-polypeptide of LTR copia-type	162	286	-	-
	Bach10g00838	373	PANTHER	SERUM RESPONSE FACTOR HOMOLOG	18	153	-	-
	Bach10g00838	373	FunFam	MADS-box transcription factor MADS-MC	30	102	-	-
	Bach10g00838	373	Gene3D	-	30	108	IPR036879	GO:0003677\|GO:0046983
	Bach10g00838	373	ProSiteProfiles	MADS-box domain profile.	18	78	IPR002100	GO:0003677\|GO:0046983
	Bach10g00838	373	MobiDBLite	consensus disorder prediction	315	354	-	-
	Bach10g00838	373	CDD	MADS_MEF2_like	19	95	IPR033896	GO:0000977\|GO:0045944

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bach10g00838	Bach-Chr10	5930307	5936896	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bach10g00838	18	104	MADS-box Gene Family	AT4G37940	80.460	1.71e-42	145

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-M-type	Bach10g00838		Retrotran_gag_2	5.1e-22	CL0523

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bach10g00838	-		-	tpra:123910135	294.664