Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach10g00809 ATGGCGACTTTAGAATCAGTTCTCAGTGTCTTCGCATCTTATCGGTGTTCAACTAAGTCCTTTTTATCTCCCAAACCACCAGACTACATAAAGCTCCAACTCGAGAATTCTCATTTTACCCTTTCCTGCAATTCCATCTTCTCTTCAACGCTCTCTTCAAATAACACCAGCAGAAGACTTTGCTTTGAATTATTGTGCTCTGCGTTGCAAGAGCTAGCGACAGAAGAAAGACCAGAGGAAACCCAGGAAACAAACTTCAAGAAGAAGCTTTACGTGTTTAACCTATCACGGTCCTTCTCGGTGGTGGACATCAAGAACCTCTTTGGCGAATGCGGAACTGTAACGGACGTCGAGATAATAAAGAAGAAAGATGGGAAAAACAAAGCCTTTGCCTTCGTTACTATGGCTTCCGGGGAAGAGGCTGAGGCTGCCATTGAGAAATTTGACTCTCATGAAGTATCAGGTCGGATAATAAGGGTAGAACTTGCCAAGCGGTTCAAGAAACGTCCTTCTCCACGTCCTCCTGGTGCCCCTGCTGACGAGACCCGCCATAAAGTTTATGCATCCAATCTTGCATGGAAAGTGAGATCTACCCATCTCAGACAGTTCATTTCTGAACATTTTAAGAAACCAGTTTCAGCCAAGGTTGTATTTGAAAGCGCTACCAGCAGATCTGCTGGATATGGATTTGTTTCTTTTGATACAAAAGAGGATGCAGAGGCGGCCATTTCTACTTTGAATGGGAAGGAATTAATGGGGCGACCAATCATCCTAAAATTTAACCAAAAACCCGTTGAAGGAACTGGAAGTAAAAAAGAGGAAGAAGAACAAGGTTATGATGATCAAGTGGAAGAATCCTAA 861 0.4321 MATLESVLSVFASYRCSTKSFLSPKPPDYIKLQLENSHFTLSCNSIFSSTLSSNNTSRRLCFELLCSALQELATEERPEETQETNFKKKLYVFNLSRSFSVVDIKNLFGECGTVTDVEIIKKKDGKNKAFAFVTMASGEEAEAAIEKFDSHEVSGRIIRVELAKRFKKRPSPRPPGAPADETRHKVYASNLAWKVRSTHLRQFISEHFKKPVSAKVVFESATSRSAGYGFVSFDTKEDAEAAISTLNGKELMGRPIILKFNQKPVEGTGSKKEEEEQGYDDQVEES 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach10g00809 286 Gene3D - 179 285 IPR012677 -
Bach10g00809 286 Gene3D - 68 178 IPR012677 -
Bach10g00809 286 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 184 263 IPR000504 GO:0003723
Bach10g00809 286 SUPERFAMILY RNA-binding domain, RBD 169 266 IPR035979 GO:0003676
Bach10g00809 286 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 90 158 IPR000504 GO:0003723
Bach10g00809 286 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 186 256 IPR000504 GO:0003723
Bach10g00809 286 MobiDBLite consensus disorder prediction 262 286 - -
Bach10g00809 286 CDD RRM_SF 90 161 - -
Bach10g00809 286 SUPERFAMILY RNA-binding domain, RBD 78 173 IPR035979 GO:0003676
Bach10g00809 286 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 88 165 IPR000504 GO:0003723
Bach10g00809 286 PANTHER OS02G0815200 PROTEIN 45 260 - -
Bach10g00809 286 SMART rrm1_1 89 161 IPR000504 GO:0003723
Bach10g00809 286 SMART rrm1_1 185 259 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach10g00809 Bach-Chr10 5690238 5692839 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach10g00809 72 263 Eukaryotic Initiation Factors Gene Family AT4G34110 29.327 3.83e-16 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach10g00809 - - qsa:O6P43_025150 328.176