Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach10g00619 ATGGCGGAGGATAGAGTGACAGGTGAAGTTCTTTGGTTTCGCGATTCTAAAGGTTTTGGCTTCATCAAACCTGACGACGGAGGAGAGGATCTCTTTGTTCATCAATCATCTATCAAATCCGATGGCTATCGCACCCTTTTAGTAGGCGATCGCGTCGAGTTCTTGGTTGCTTTTGGTGAAGACGGAAAATCCAAAGCCGTTGATGTCACTGGCCCCAATGGAGCTCCTCTCCAGTCTAAGAAAGATACTTACGGTGGCGGAGGTGGCCGTGGCCGTGGCGGTGGATGGAAAGGCCGGGATAGGCGCAATGGCGGCGGCGGCTGCTATTACTGCGGTGATTTTGGCCACATAGCCCGGGATTGCAATGCTGGAGGCGGCGCTAGTGGCGGTGCTAGTGGTTGTTATAATTGTGGTCAGTTTGGCCACTTGGCAAGGGATTGCTCTAGCTCAATCAACAGCGGCGCTTGCTATACCTGTGGTGAAGTTGGGCACATGGCGCGAGACTGCACAAACGGAACCGGTGGCGGTGGTAGTGGTAGTAGTAGTGGACGTTGCTTTAAATGTGGGGAAGTCGGCCACATGGCGAGGGATTGCAGCAAGGAAAGCGGTGGAAGATATGGCGGTAGCAGCGGCGGTGGCGTAACCAGACAAAGTACTTGCTTTAATTGTGGGAAAGCTGGGCATTTTGCGAAAGAATGCAATGAGTCTTCTGATTGA 717 0.5272 MAEDRVTGEVLWFRDSKGFGFIKPDDGGEDLFVHQSSIKSDGYRTLLVGDRVEFLVAFGEDGKSKAVDVTGPNGAPLQSKKDTYGGGGGRGRGGGWKGRDRRNGGGGCYYCGDFGHIARDCNAGGGASGGASGCYNCGQFGHLARDCSSSINSGACYTCGEVGHMARDCTNGTGGGGSGSSSGRCFKCGEVGHMARDCSKESGGRYGGSSGGGVTRQSTCFNCGKAGHFAKECNESSD 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach10g00619 238 Pfam Zinc knuckle 133 148 IPR001878 GO:0003676|GO:0008270
Bach10g00619 238 Pfam Zinc knuckle 184 200 IPR001878 GO:0003676|GO:0008270
Bach10g00619 238 Pfam Zinc knuckle 155 171 IPR001878 GO:0003676|GO:0008270
Bach10g00619 238 Pfam Zinc knuckle 219 234 IPR001878 GO:0003676|GO:0008270
Bach10g00619 238 Pfam Zinc knuckle 107 121 IPR001878 GO:0003676|GO:0008270
Bach10g00619 238 Pfam 'Cold-shock' DNA-binding domain 7 71 IPR002059 GO:0003676
Bach10g00619 238 ProSitePatterns Cold-shock (CSD) domain signature. 19 38 IPR019844 -
Bach10g00619 238 PRINTS Cold shock protein signature 8 23 IPR002059 GO:0003676
Bach10g00619 238 PRINTS Cold shock protein signature 29 38 IPR002059 GO:0003676
Bach10g00619 238 PRINTS Cold shock protein signature 44 62 IPR002059 GO:0003676
Bach10g00619 238 Gene3D - 213 238 - -
Bach10g00619 238 SUPERFAMILY Retrovirus zinc finger-like domains 99 149 IPR036875 GO:0003676|GO:0008270
Bach10g00619 238 ProSiteProfiles Zinc finger CCHC-type profile. 184 200 IPR001878 GO:0003676|GO:0008270
Bach10g00619 238 SUPERFAMILY Retrovirus zinc finger-like domains 129 172 IPR036875 GO:0003676|GO:0008270
Bach10g00619 238 ProSiteProfiles Zinc finger CCHC-type profile. 108 121 IPR001878 GO:0003676|GO:0008270
Bach10g00619 238 ProSiteProfiles Cold-shock (CSD) domain profile. 5 71 IPR002059 GO:0003676
Bach10g00619 238 Gene3D - 1 83 IPR012340 -
Bach10g00619 238 SUPERFAMILY Nucleic acid-binding proteins 4 71 IPR012340 -
Bach10g00619 238 Gene3D - 95 128 - -
Bach10g00619 238 Gene3D - 179 206 - -
Bach10g00619 238 Gene3D - 152 178 - -
Bach10g00619 238 Gene3D - 129 151 - -
Bach10g00619 238 ProSiteProfiles Zinc finger CCHC-type profile. 220 235 IPR001878 GO:0003676|GO:0008270
Bach10g00619 238 PANTHER COLD SHOCK DOMAIN PROTEIN 2 172 235 - -
Bach10g00619 238 MobiDBLite consensus disorder prediction 69 98 - -
Bach10g00619 238 SMART csp_8 7 72 IPR011129 GO:0003676
Bach10g00619 238 CDD CSP_CDS 6 71 IPR002059 GO:0003676
Bach10g00619 238 SMART c2hcfinal6 184 200 IPR001878 GO:0003676|GO:0008270
Bach10g00619 238 SMART c2hcfinal6 155 171 IPR001878 GO:0003676|GO:0008270
Bach10g00619 238 SMART c2hcfinal6 107 123 IPR001878 GO:0003676|GO:0008270
Bach10g00619 238 SMART c2hcfinal6 219 235 IPR001878 GO:0003676|GO:0008270
Bach10g00619 238 SMART c2hcfinal6 133 149 IPR001878 GO:0003676|GO:0008270
Bach10g00619 238 ProSiteProfiles Zinc finger CCHC-type profile. 156 171 IPR001878 GO:0003676|GO:0008270
Bach10g00619 238 ProSiteProfiles Zinc finger CCHC-type profile. 134 147 IPR001878 GO:0003676|GO:0008270
Bach10g00619 238 SUPERFAMILY Retrovirus zinc finger-like domains 176 236 IPR036875 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach10g00619 Bach-Chr10 4408278 4408994 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Bach10g00619 CSD 2.6e-22 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach10g00619 K09250 - gmx:106796585 275.018
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bach10g00619 10 4408278 4408994 Bach10g00619 10 4408278 4408994 ECH