Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach10g00552 GTGGTAGTGGGGCAGTTGCTGTAGAAAGCGATGGGTAATTTTCAGTTAGAAATTTAGAGGGCATGGTCATTTCTCTGGGTTTTGGCCGTGTTTTTCCATTTTGAAGGTGACTCCTGGATCCGGAGCCTAAAGGGTCCAATACTGATCACTTTTCTTCTCTCTTATGATTTTCGTCCCAAGTTCCTGGGTATTTTGAGCTAGTTTGCTGCGATTGATCTGTTCGTTCTTGGCTTCAATTCCACAGTTATTTGTTTGACAAAGATTGGTATGCTCAGCAAACATGTCATTAAAAAGCATAGTTCGTGAATTGAAGGAGATGAAAGATGGCATGGGCAGCATATCAAGACGAGTTGCAGAAGGCAAGCAATGGCTCAGTAGGTCAAAGTCACATATTGCTCCTGACGGCCCTCTACCTACACTTGAACCTATACAACAGGGACAATGGGCAAATCTACCACCCGAACTACTTTTGGACATAATCCGGAGAGTAGAAGAAAGTGAAACATCTTGGCCTGCGCGAGCAGTCGTTGTTTCTTGTGCTTCAGTATGTAAATCATGGAGGACCATAACGAAGGAGATCGTCAAAACTCCTGAGCAATGCGGGAGGCTTACCTTTCCTATCTCATTGAAGCAGCCGGGTCCTCGGGATTCTCCAATACAATGCTTTATCAGGAGGAATAGAGAAACTTCTACATATTTATTGTACTCAGGTCTGGTGCCATCGGAGAATGAGAATGATAAGTTGCTATTAGCTGCCAAAAAGATAAGAAGGGCAACGGGCACAGATTTTGTTATATCTTTGGTTGCAGATGATTTTTCTCGGGCCAGCAACACATATGTTGGTAAATTGAGGTCCAATTTTTTGGGTACCAAGTTCACCATATATGACAGTCAACCTCCGCTTGAAGCTGGAGTTCAACCAAATAACCGATCAAGTCGGAGATTTCACTCTAAGCAGGTATCTCCAAGAGTTCCAGCATGTAACTACAATGTTGGCACCATTTCCTATGAGCTCAATGTTCTTCGTACCAGAGGACCGAGAAGAATGCGCTGCATCATGAACTCCATACCTGTCTCAGCTATTCAGGAAGGGGGCAATGCCCCAACACCAACATCATTTCCTCATATCAATATTGATGAGCAATTTTCTCTCTCGCCAGCATTGAAAGGGAAAGATACCCTTAAAGATTTCAGCTCTGCGAATCTTTCAGAACGACCAGCGTTGAGCCAGGTGTCGGTTGAGCCCCTCGTGCTTAAAAACAAGGCTCCCAGATGGCATGAGCAGCTGCAGTGCTGGTGCCTTAACTTCAAGGGTCGCGTTACAGTGGCTTCTGTTAAGAATTTTCAGCTTGTAGCTGCTGTTGATCCCTCGCATAATGTTTCAGCTGCAGAACAAGACAGGGTAATCTTGCAGTTCGGAAAGATTGGAAAAGACATATTTACAATGGATTACCGTTATCCACTCTCTGCCTTCCAAGCCTTCGCCATTTGCTTGAGCAGCTTCGACACTAAACCTGCCTGTGAATGAAACCCCATGTTGCTTGAGATTGTAATCTTTGTTCCATATATATAGTATGCTAGGCACAGTTGATCAAACATTTAACATGCAGCTGAGCTGACCATCTTAGCTGTGCAGTAATTAGCACTTTACCTTGTGTTAGTCGTTGATTGTGGAATTTAAGCTG 1685 0.4404 MSLKSIVRELKEMKDGMGSISRRVAEGKQWLSRSKSHIAPDGPLPTLEPIQQGQWANLPPELLLDIIRRVEESETSWPARAVVVSCASVCKSWRTITKEIVKTPEQCGRLTFPISLKQPGPRDSPIQCFIRRNRETSTYLLYSGLVPSENENDKLLLAAKKIRRATGTDFVISLVADDFSRASNTYVGKLRSNFLGTKFTIYDSQPPLEAGVQPNNRSSRRFHSKQVSPRVPACNYNVGTISYELNVLRTRGPRRMRCIMNSIPVSAIQEGGNAPTPTSFPHINIDEQFSLSPALKGKDTLKDFSSANLSERPALSQVSVEPLVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAVDPSHNVSAAEQDRVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach10g00552 415 Gene3D Tubby Protein; Chain A 114 415 IPR025659 -
Bach10g00552 415 PANTHER TUBBY-RELATED 50 413 - -
Bach10g00552 415 Gene3D - 48 102 - -
Bach10g00552 415 Pfam Tub family 116 410 IPR000007 -
Bach10g00552 415 CDD F-box_AtTLP-like 55 99 - -
Bach10g00552 415 SUPERFAMILY F-box domain 49 99 IPR036047 GO:0005515
Bach10g00552 415 ProSitePatterns Tub family signature 2. 400 415 IPR018066 -
Bach10g00552 415 FunFam Tubby-like F-box protein 112 415 - -
Bach10g00552 415 Pfam F-box domain 55 102 IPR001810 GO:0005515
Bach10g00552 415 SUPERFAMILY Tubby C-terminal domain-like 104 415 IPR025659 -
Bach10g00552 415 ProSitePatterns Tub family signature 1. 343 356 IPR018066 -
Bach10g00552 415 PRINTS Tubby superfamily signature 343 359 IPR000007 -
Bach10g00552 415 PRINTS Tubby superfamily signature 186 210 IPR000007 -
Bach10g00552 415 PRINTS Tubby superfamily signature 235 262 IPR000007 -
Bach10g00552 415 PRINTS Tubby superfamily signature 170 186 IPR000007 -
Bach10g00552 415 PRINTS Tubby superfamily signature 325 342 IPR000007 -
Bach10g00552 415 PRINTS Tubby superfamily signature 393 415 IPR000007 -
Bach10g00552 415 PRINTS Tubby superfamily signature 372 391 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach10g00552 Bach-Chr10 3965124 3968025 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach10g00552 1 415 TUB Transcription Factor Family AT2G18280 66.746 0.0 538
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Bach10g00552 Tub 2.3e-109 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach10g00552 K19600 - gmx:100798958 705.286
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bach4g00649 4 4344657 4347705 Bach10g00552 10 3965124 3968025 BWGD
Bach10g00552 10 3965124 3968025 Bach10g00552 10 3965124 3968025 ECH
Bach10g00552 10 3965124 3968025 Bach4g00649 4 4344657 4347705 ECH