Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach10g00546 ATGCATCGTTGCAACAGCTCTCAGGGGCACGTGATGGGACCTTGCCCGTGTGGTTTGTATCACAGCCAAACAAACTCATTCTCCATGTTATTCTCAATGAACAGCCAGAAACCCTATGATCAGTATGACGAAACCGACATGTATTCCTACACGCCCTCGTCTTCTTCCGTGGACTGCACGCTCTCTCTAGGCACCCCGTCCACGCGTTTTACCGAAGACGAAGAGAAGCGTAACCGCCGAGAACGTCGCAATTCCGTCTCCAACTACAGTTGGGATTTATTACAATCCAAACACAACTCACAATATTCCCACAGCAGCCAACCGACCAATAGTAACAACTCCACCAATGATCCTCTCCTCGCTCGTCGCTGCGCTAACTGTGACACCACCTCCACACCCCTTTGGAGAAATGGCCCTAGAGGACCAAAGTCGCTATGCAATGCGTGTGGGATTAGATTCAAGAAGGAAGAGCGAAGAGCGAGCGCTGCCGCTGCCACCACAGGGGCGGCTTCAGGCGGCGTAATGGATTCTCAGCAGATGTATAACAATTCATGGTATTCTCACTCGCAGAACCAGAAAATGCCGTGCTACTCGCCGGCAATGGGTAATGAGTTTTGCTTCGTCGATGACGGCGACCGAGAACCAGACAACGGCAGTCCGTACCTCTCTTGGAGACTCAACGTCACAGACAGACCGAGCCTCGTCCACGACTTTACGAGATGA 723 0.5201 MHRCNSSQGHVMGPCPCGLYHSQTNSFSMLFSMNSQKPYDQYDETDMYSYTPSSSSVDCTLSLGTPSTRFTEDEEKRNRRERRNSVSNYSWDLLQSKHNSQYSHSSQPTNSNNSTNDPLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRASAAAATTGAASGGVMDSQQMYNNSWYSHSQNQKMPCYSPAMGNEFCFVDDGDREPDNGSPYLSWRLNVTDRPSLVHDFTR 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach10g00546 240 Gene3D - 120 194 IPR013088 GO:0006355|GO:0008270
Bach10g00546 240 SMART GATA_3 118 173 IPR000679 GO:0006355|GO:0043565
Bach10g00546 240 MobiDBLite consensus disorder prediction 51 88 - -
Bach10g00546 240 ProSitePatterns GATA-type zinc finger domain. 124 149 IPR000679 GO:0006355|GO:0043565
Bach10g00546 240 ProSiteProfiles GATA-type zinc finger domain profile. 118 154 IPR000679 GO:0006355|GO:0043565
Bach10g00546 240 MobiDBLite consensus disorder prediction 69 86 - -
Bach10g00546 240 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 121 160 - -
Bach10g00546 240 CDD ZnF_GATA 123 155 IPR000679 GO:0006355|GO:0043565
Bach10g00546 240 Pfam GATA zinc finger 124 158 IPR000679 GO:0006355|GO:0043565
Bach10g00546 240 PANTHER GATA TRANSCRIPTION FACTOR 18 10 240 IPR044272 GO:0003700|GO:0009908
Bach10g00546 240 MobiDBLite consensus disorder prediction 51 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach10g00546 Bach-Chr10 3912896 3913716 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach10g00546 2 240 C2C2-Gata Transcription Factor Family AT3G50870 44.251 2.28e-62 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Bach10g00546 GATA 5.7e-18 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach10g00546 - - vvi:100247862 318.931