Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach10g00538 ATGGGAGACTACGATGATGCTTTCAATCGCAACCAAAACGCCGCCGTCCAGGCCCGTACCAAAGCACAGAACCGCGCCAATGTCCTTCAGCTCAAGCTGATTGGACAGAGTCACCCAACTGGTCTCACAGCCAATCTTCTGAAACTCTTTGAGCCCAGGCCTCCGTTAGAGTACAAACCACCACCGGAAAAGAGAAAATGTCTTCCTTTAACAGGGATGGCACAATTTGTGAGTAAGTTTGCTGAGCCTGGAGACCCAGAATATGCTCCGCCTGTTCAAAAAGCTGAAACTCCTGCTCAAAAAAAAGCTAGAATACATAAGTTAAGACTGGAGAAAGGAGCAGAGAAGGCTGCAGAAGAGCATGAAAAATATGATCCTCGTAATGATCCAAATATATCAGGAGATCCATTCCGGACACTGTTTGTTGCCAGACTTAGTTATGAGACAACTGAGAACAGAATCAAAAGGGAGTTTGAATCTTATGGTCCAATCAAACGGATTCGATTGGTTACTGACAAAGAGACAAATAAGTCTAAGGGTTATGCTTTCATTGAGTATGTGCATCAACGAGACATGAAAGCTGCTTATAAACAAGCTGATGGTAGAAAGATTGAGGGTAGAAGGGTGCTTGTGGATGTTGAACGTGGGAGGACTGTTCCAAATTGGCGACCTCGACGATTGGGTGGTGGGTTAGGTACTGCTAGAATCGGGGGTGAAGAAGTTAATCAGCGAAATTCTGGGAGGGAGCAAGCGCAGTCTGTACCTTCTCGTTCTGAAGAGCCAAGAGTGCGGGAGGATCGCCTTGGTGACCGGGATAGAGAAAAATCCCGTGAAAGAGTTAGAGATAGAGATCGAGAAAGTGAGCGTTCTCGTGAACTCTCTCACGAAAGAGGTAGGGACAGGGATCGTGATCATAGAGAGGATAGACACCACAGAGACAGAGATAGGAATAGGGACAAAGACAGGGATAAAGAAAGAGAAAGAGACCGTGGACGTGATCGGGATAGAACACGTGGTCGTGACCGTGATCGTGGTCGGGATAGAGACAGGGACCGTGAACGAGATCATGATCGTCATCGGGAAAGGGATAGAGATAATGAAGTTGGGGATTTGGATAGGGGACACTCACACGATGGGGAGTATGATTATGACCGTGTTGAGTCTAAACATGAGAGGGACAGACACAGTGAAAAGGAGCGTGACTATGAACCTGAGGATGATCGTGGGTGGTATAATCAACCTGAGCATGGACGCCGACATGCAGACCCTGATCACGGTCTTGAGCAGGATGATCACTATGAGCATCATCGAGGAAGGAGCCAGTACGATCATGGAGATGATCATGACCATTACAATCAATATCCTGACGATGATCGGATGGAAGATGACTACCACTCAGAACGTGCAGCATCTGAATCACGGGACAGGGAGAGAAATCGTGATCCTCGGGAGTATGATTACTAGGAGCGTGAAGCAATCCAAGCGCAAAGAAAGAGCTCACTTGTTGCTGCCATCCATATGTAGTGATGGATTCTTTTGTCCCTATTTGAATGCTTTATTACTGTGGCTTGGGAGAGTTGGTTGGTTGTTTCTGAATCTTAACGTTTTGGGATGGTTTTGGACTGTTAGTATTGGTGCTACTAGAGGGTTTGTGTAACTTTTTGTTCTTTTCTTCAGACAATTAGAAAAACAGGTGGTTTTTATATTCTTATTATCTTCAGTGGGAACAATTGTTTGAATTTGAAGTCACTGTTTGGTTCCCGAGCTACGTCTAAGTTGTCATCTGAGTGGAATATCAAGTGAATCCCTATATAGAAAAACTTCCCGGA 1829 0.4549 MGDYDDAFNRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEYKPPPEKRKCLPLTGMAQFVSKFAEPGDPEYAPPVQKAETPAQKKARIHKLRLEKGAEKAAEEHEKYDPRNDPNISGDPFRTLFVARLSYETTENRIKREFESYGPIKRIRLVTDKETNKSKGYAFIEYVHQRDMKAAYKQADGRKIEGRRVLVDVERGRTVPNWRPRRLGGGLGTARIGGEEVNQRNSGREQAQSVPSRSEEPRVREDRLGDRDREKSRERVRDRDRESERSRELSHERGRDRDRDHREDRHHRDRDRNRDKDRDKERERDRGRDRDRTRGRDRDRGRDRDRDRERDHDRHRERDRDNEVGDLDRGHSHDGEYDYDRVESKHERDRHSEKERDYEPEDDRGWYNQPEHGRRHADPDHGLEQDDHYEHHRGRSQYDHGDDHDHYNQYPDDDRMEDDYHSERAASESRDRERNRDPREYDY 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach10g00538 487 MobiDBLite consensus disorder prediction 81 102 - -
Bach10g00538 487 SUPERFAMILY RNA-binding domain, RBD 126 238 IPR035979 GO:0003676
Bach10g00538 487 CDD RRM_snRNP70 137 227 IPR034143 GO:0030619
Bach10g00538 487 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD 59 335 - -
Bach10g00538 487 Pfam U1 small nuclear ribonucleoprotein of 70kDa MW N terminal 41 129 IPR022023 -
Bach10g00538 487 MobiDBLite consensus disorder prediction 113 132 - -
Bach10g00538 487 SMART rrm1_1 139 212 IPR000504 GO:0003723
Bach10g00538 487 MobiDBLite consensus disorder prediction 220 487 - -
Bach10g00538 487 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 140 209 IPR000504 GO:0003723
Bach10g00538 487 MobiDBLite consensus disorder prediction 113 129 - -
Bach10g00538 487 MobiDBLite consensus disorder prediction 239 257 - -
Bach10g00538 487 MobiDBLite consensus disorder prediction 258 487 - -
Bach10g00538 487 Gene3D - 125 250 IPR012677 -
Bach10g00538 487 FunFam U1 small nuclear ribonucleoprotein 70 kDa 125 250 - -
Bach10g00538 487 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 138 216 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach10g00538 Bach-Chr10 3834184 3839314 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach10g00538 138 186 C2H2 Transcription Factor Family AT2G19380 40.816 2.14e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach10g00538 K11093 - qsa:O6P43_033721 566.229