Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach10g00532 TTCAGAGCTCGGTGAGTTGCTAACTGGAAACAAAGGAAGAGAGAAGCGAGGATGACGACTCGAATAGCGCCGGGAGTGGGAGCAAACTTGCTGGGCCAACACTCAGCAGAGAGGAACCAAGATGCTACTGCTTATGTCGGCAATCTCGATCCCCAGGTTACTGAGGAGTTACTATGGGAGCTATTTGTCCAGGCTGGTCCAGTTGTTAATGTATATGTTCCAAAGGACAGAGTGACCAATCAACACCAAGGTTATGGATTTGTTGAATTCCGGAGTGAAGAAGATGCTGACTATGCAATCAAGGTTCTTAATATGATTAAACTTTACGGGAAACCTATACGTGTAAATAAGGCATCTCAAGATAAAAAGGGCTTGGATGTGGGGGCTAATCTTTTCATTGGAAACCTTGATCCTGATGTAGATGAGAAGCTATTGTATGATACTTTCAGTGCATTTGGAGTCATTGTTACAAATCCAAAGATCATGAGAGATCCTGAGACAGGAAACTCCCGTGGTTTTGGCTTTATTAGCTATGATTCGTTTGAGGCATCTGATGCAGCTATTGAGGCGATGAATGGACAATATCTATGCAATCGTCAGATAACAGTTTCATATGCATATAAGAAAGACACTAAAGGGGAAAGGCATGGCACCCCAGCAGAGAGAGTTTTGGCTGCAAGCAATCCAACTGCACAGAGGAGCAGGCCGCACACTTTATTTGCCAGCGGACCTCCAACACTTCCCAATGTTCCTCAGGCTAATGGTACCATCACTGCTCCTGCACCTCCTCGGCCCTTCTCAAACGGAGTTGCTCCTGCTGCTATTCCTACCCTCCGTCCACCACCCCTTCAAGGTGCACCGTTTCCCCCTATGCAGGTAGCTGGGCAACCTGCATGGCATCAACAGCAAGCTGGTCAACCAATCCCACCACCTGTAATGCCGCCACCTCCCTTCCAGCAGTTTAGGCCACCTCAGTCGGGTATGCCACCACCTCCTCCACCACAGGCAGTTCCGGTTCCTCCCAGGCCTCTGCCACCACCATCAGTACTGGCAGGCCAACCACCTATTTGGCAACCACCCCCACCCCCTCACCCCCAGCAACAAGGTGTGAGGCCCCCAATGCCTCAGTCGTCAATGCCACCGCCTCCTCAAAATCTTCCTCCTCCTCCTTCAAGTTAA 1179 0.497 MTTRIAPGVGANLLGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKGLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPETGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPTAQRSRPHTLFASGPPTLPNVPQANGTITAPAPPRPFSNGVAPAAIPTLRPPPLQGAPFPPMQVAGQPAWHQQQAGQPIPPPVMPPPPFQQFRPPQSGMPPPPPPQAVPVPPRPLPPPSVLAGQPPIWQPPPPPHPQQQGVRPPMPQSSMPPPPQNLPPPPSS 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach10g00532 375 MobiDBLite consensus disorder prediction 290 375 - -
Bach10g00532 375 CDD RRM1_SF3B4 28 100 IPR034158 -
Bach10g00532 375 CDD RRM2_SF3B4 111 193 IPR034159 -
Bach10g00532 375 PRINTS Proline rich extensin signature 227 248 - -
Bach10g00532 375 PRINTS Proline rich extensin signature 259 275 - -
Bach10g00532 375 PRINTS Proline rich extensin signature 289 306 - -
Bach10g00532 375 PRINTS Proline rich extensin signature 317 342 - -
Bach10g00532 375 SUPERFAMILY RNA-binding domain, RBD 25 195 IPR035979 GO:0003676
Bach10g00532 375 MobiDBLite consensus disorder prediction 248 271 - -
Bach10g00532 375 PANTHER SPLICING FACTOR 3B SUBUNIT 4 14 363 - -
Bach10g00532 375 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 191 IPR000504 GO:0003723
Bach10g00532 375 SMART rrm1_1 26 99 IPR000504 GO:0003723
Bach10g00532 375 SMART rrm1_1 113 187 IPR000504 GO:0003723
Bach10g00532 375 Gene3D - 16 110 IPR012677 -
Bach10g00532 375 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 97 IPR000504 GO:0003723
Bach10g00532 375 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 184 IPR000504 GO:0003723
Bach10g00532 375 FunFam splicing factor 3B subunit 4 110 200 - -
Bach10g00532 375 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 25 103 IPR000504 GO:0003723
Bach10g00532 375 FunFam Splicing factor 3b subunit 4 16 109 - -
Bach10g00532 375 MobiDBLite consensus disorder prediction 234 375 - -
Bach10g00532 375 Gene3D - 111 200 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach10g00532 Bach-Chr10 3804351 3809176 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach10g00532 18 198 Eukaryotic Initiation Factors Gene Family AT4G34110 29.798 5.86e-19 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach10g00532 K12831 - gmx:100792707 558.525