Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach10g00517 CTGGAATCTTCCTCAAGGATTACGGCAATAGCCGATTATAGGGGCTTTGTAGAGGTCTTACTTTCCAAAACGAGTTCCTTTTGTTACGCTCTTGATTATTCTGCTTTCAACCTAATCATAAATTTGTGTGGGAATGGCGAGTGGATCCGGGGAATCAACGAGCGCTCCTCCACAAAGCTCAAGTTGTTCATCAAATGGTTGTAACGATGCAGGTGATTTTGAATGCAACATCTGCTTCGAGTTAGCTCAAGACCCAGTGATCACGCTGTGTGGTCATCTCTTTTGTTGGCCATGCCTTTATAGATGGCTTCATCATCACTCACATTCTCAAGAATGCCCTGTTTGCAAGGCTATCATACAAGAGGCAAAATTGGTTCCACTGTATGGGAGGGGCAAAATACAGAATGATCCGAGAACCAAATCATATCCTGGAATGGAAATTCCCCAACGTCCTACAGGGCAGAGACCTGAAACAGCACCTCCTCCTCAACCCAATCCCTTTGGGAATTATGGCTTTGGCTTTATGGGGGGTTTCATACCCACGGCAACTGCCAGGATTGGAAACTTCACACTTTCTACAGCTTTTGGTGGTTTTATCCCATCTCTGCTTAACATTCAATTCCATGGCTTTCAAGATGCCACTGTCTATGGAACTACTTCTGGTTATCCCGTTGGGTTCAACTCATTTCATGGATGGAACGTACATGGTTATCCTCAGCCAGCTGGTCATAGGCCCCGGCATGATGACAATGTTTTGAAGAATCTGCTTATGTTGATTGGTGTACTTGTTCTCCTAACACTCATTTTTGGGTGGTAAATGGCGAGTGGATCCGGGGAATCAACGAGCGCTCCTCCACAAAGCTCAAGTTGTTCATCAAATGGTTGTAACGATGCAGGTGATTTTGAATGCAACATCTGCTTCGAGTTAGCTCAAGACCCAGTGATCACGCTGTGTGGTCATCTCTTTTGTTGGCCATGCCTTTATAGATGGCTTCATCATCACTCACATTCTCAAGAATGCCCTGTTTGCAAGGCTATCATACAAGAGGCAAAATTGGTTCCACTGTATGGGAGGGGCAAAATACAGAATGATCCGAGAACCAAATCATATCCTGGAATGGAAATTCCCCAACGTCCTACAGGGCAGAGACCTGAAACAGCACCTCCTCCTCAACCCAATCCCTTTGGGAATTATGGCTTTGGCTTTATGGGGGGTTTCATACCCACGGCAACTGCCAGGATTGGAAACTTCACACTTTCTACAGCTTTTGGTGGTTTTATCCCATCTCTGCTTAACATTCAATTCCATGGCTTTCAAGATGCCACTGTCTATGGAACTACTTCTGGTTATCCCGTTGGGTTCAACTCATTTCATGGATGGAACGTACATGGTTATCCTCAGCCAGCTGGTCATAGGCCCCGGCATGATGACAATGTTTTGAAGAATCTGCTTATGTTGATTGGTGTACTTGTTCTCCTAACACTCATTTTTGGGTGGTAAAATTAATCATTTCACCGTTAAGCTCAGAATGCTCATTAGTGTTGCTTGCTATCATGTTTGTAAATATATTAGCTGCCTTCTAGAGGGAATTTTATGATTGAGAATGCTGGCTTGTTTGGCCCTTTTTCCAAAGTTTATTATTAGTATATTACCCTCTGCATTG 1664 0.4405 MASGSGESTSAPPQSSSCSSNGCNDAGDFECNICFELAQDPVITLCGHLFCWPCLYRWLHHHSHSQECPVCKAIIQEAKLVPLYGRGKIQNDPRTKSYPGMEIPQRPTGQRPETAPPPQPNPFGNYGFGFMGGFIPTATARIGNFTLSTAFGGFIPSLLNIQFHGFQDATVYGTTSGYPVGFNSFHGWNVHGYPQPAGHRPRHDDNVLKNLLMLIGVLVLLTLIFGW 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach10g00517 227 MobiDBLite consensus disorder prediction 87 119 - -
Bach10g00517 227 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 17 221 IPR045103 GO:0005783|GO:0006511|GO:0061630
Bach10g00517 227 FunFam E3 ubiquitin-protein ligase RNF185 isoform X2 15 85 - -
Bach10g00517 227 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 17 95 IPR013083 -
Bach10g00517 227 ProSiteProfiles Zinc finger RING-type profile. 31 72 IPR001841 -
Bach10g00517 227 SUPERFAMILY RING/U-box 28 84 - -
Bach10g00517 227 ProSitePatterns Zinc finger RING-type signature. 46 55 IPR017907 -
Bach10g00517 227 Pfam Zinc finger, C3HC4 type (RING finger) 30 71 - -
Bach10g00517 227 SMART ring_2 31 71 IPR001841 -
Bach10g00517 227 CDD RING-HC_AtRMA-like 29 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach10g00517 Bach-Chr10 3707726 3709052 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach10g00517 20 225 C3H Transcription Factor Family AT2G23780 60.748 4.82e-87 255
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach10g00517 K10666 - gmx:100814783 347.821