Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach10g00453 ATGGCTGATGAACAGCCCGTAACGACGGGGAGGCGACGGGGCAGGGGAGCGGAGGCCTTGGTTCGATCTGAAGCCTTGGAACGCCTAAAAGCTCTACGCAGCGGTAGGCGCCGTTCGGATGGCGGCGGATTCCAAATTAAATTGGAAAACCCTATTTATGACACCGTCGCTGAGGAAGAGTACGATGCTCTTGTGGCCAAGCGCCGAGAAGAATCCCGAGGGTTTATCGTTGACGATGACGGTCTTGGATACGGTGACGAAGGTGAGGAAGAGGACTGGTCCAAAGCTGGATTCACTCTTTCATCAGATGAATCGGAAGGTGAATCAGAGAGGCCGAAAAGGAAGAAGGTAGAAAAGAAAGATCCGCAACCTAAGAAATCCTCTTCTTCTCTCTCGGCTGCGGCAGCGATGATTGGGGCGCAGAGGTTATCTTCGATGTTCACTTCGTCGGTTTTTAAGAAGAGTAGAGACGATAAGGTTAAAGGATTTTCCTGCGACAGTATCGTGGATGATGTTATTGCGGAGTTTGCACCTGATGAGACTGATAGACAAAGGCGTAGAAGGACACAAGCGAATTCCATATCTGGTATGAATAACGTTTTTCCGTTTAATAGCGTTAAGAGTGAGAATTCGCGTTCTGATTTGATGTCCAGTTCGTTACTGCCAGACGTTAGTGACAATAAACTTGAATCGAGTGCGGTTTTGAAAGATGATGGTTGTGCGTTGGATTTAGAGCAAAACTTTGAATCGGTTAGGGAAAATGCTTCTGTTAACGAACAAGAGCATGGGCTACTTATTGATTCTGAAAATGGCCAGCCATCGGTAATGCAATCAAATAATTCTCCAACTAATGGAGATATAATCGAGGAGAAAGTGCTTAATGATGTTAGAACAGAAACGAAACTAGCAAAGAAGGAGGTAATTACTTTGAATGCAAAAATTAAAGAAGAGGAGGATCCGGCATTGAGTGCAACTGCAGGTTGGCAGGCAACCAAAAACGGAGGGGATATTAGTGAGGGTGATTCGAAGGTGGCCAGCTATGCTTCAAACCGTGAAGATAATTCAGATTTTAATCTGGAGGCAGATGGATCGCTGCCATTCTACATACTCGATGCCCACGAGGAGTTCTATGGAGCCAATATGGGCACCCTATATTTGTTTGGCAAGGTCAAAGCAGGGGATTCGTATCAGAGCTGCTGTGTTGTCGTGAAGAACATGAAGAGGTGTGTCTATGCAATTCCAAACCGTCCTTTGCTTTACACTGATGAGATGATAAAGCTTGAGAAAGATGTTGAAGAGTCACGAATCTCTGCTACAGATTTCAATAAAAAGCTGCAAGATTTGGTGTCTGGTTTAAAGAGTGAGATAGCAAAACAGCTGTTAGATCTGAACGTTTCAACCTTTAGCATGGCACCTGTTAAGAGGAAATATGCATTTGACCGATCCGAAATACCAACTGGCGAAAATTATTTGTTGAAGATCAATTATCCTTTCAAGGATCCACCCCTTCCGGTAGACCTCAAAGGAGAAAGTTTTTGTGGTCTCCTAGGAACTCATTGCAGTGCGTTGGAACTTTTTCTTATTAAAAGAAAGATAAAGGGGCCTTCGTGGCTACAGGTTTCGAACTTTTCTACCAGCTCAACCTCTCAAAGGGTGAGCTGGTGCAAATTTGAAGTGACTGTTGACTCGACCAAAGACATACGCAATTTAACTTCCACAAAAATTAGTTTTGAGATTCCACCTGTCGTTGTCTCTGCCGTAAATTTGAAAACCACCATAAATGATAAACAAAACATAAATGAGATTGTCTCTGCATCCATTGTCTGTTGCCACAGGGTTAAGATTGACACTCCCATGTTGGCTTCTGAATGGAAGAGACCTGGAATGCTCACCCATTTTACTGTTGTCCGTAAGCTTGATGGAGGCATATTTCCACTGGGATTTAGTAAGGACGTTACAGACAGAAACTCAAAAGCTGGGTCAAATGTTCTGTGCGTTGAAAGCAGTGAGAGGGCTTTGTTAAACCGCCTATTGATAGAACTGCACAAGTTGGATAGTGATGTCCTTGTTGGACATAACATTTCTGGGTTTGACTTGGATGTTCTTCTCCACAGATCCCAGGCCTGCAAAGTGCCGAGCAGCATGTGGTCCAAAATAGGTCGCCTCAAGCGTTCTGTGATGCCTAAGCTCGCTAGAGGAAGCACTATTTTTGGCTCTGGAGCAAGCCCTGGGATCATGTCTTGCATTGCGGGTCGTCTTCTTTGTGATACATATTTGTGTTCCCGTGACCTATTAAAGGAGGTTAGTTACTCTTTAACTGAACTTGCAAAAACTCAGCTGAACAAAGTTCGTAAGGAAGTTGCGCCCCACGATGTCCCGAAAAAATTCCAATCGGCAGAATCCCTTATGGAACTTATTGAATATGGCGAGACGGATGCGTGGTTGTCAATGGAACTCATGTTTCATTTGAGTGTTCTTCCCCTCACACGTCAGCTGACTAATATTAGTGGTAACCTATGGGGAAAAACTCTTCAGGGCGCAAGGGCACAGCGAGTGGAGTATCTTTTGTTACATGCTTTCCATGCAAAGAAATATATTGTGCCGGACAAGATTCCACCCCATTTAAACCAAGCAAAATTGGCAAAACGTAGAATAGCTGAGGATAGCAACTCAGATAAAGCAGATATTGATGATAGAAATTTTGATATTGACGCTCCTGAAAGCGATCAAAAGAAAAGGAAAAAGGCTCCTTCCTATGCTGGGGGACTGGTTTTGGAGCCAAAGAAGGGTTTATATGACAAATATATATTACTTCTGGACTTCAATAGTCTTTATCCTTCTATTATTCAGGAATATAATATATGCTTCACAACTGTTGAAAGATCTTCAGATGGATCTTTTCCTCGTTTACCTTCTAGCAAAACACCTGGAGTGTTGCCAGAGTTGCTGAAAAATCTGGTTCAGAGGAGGAGAATGGTAAAGTCATGGATGAAAAATGCATCTGGTCTTAAAGTTCAGCAACTGGACATTCAGCAGCAAGCACTAAAGCTTACTGCAAACAGTATGTATGGATGTCTGGGATTTTCCAATTCAAGATTTTATGCAAAGCCCCTGGCAGAGCTTATAACCACACAGGGAAGGGATATATTACAAAGTACCGTTGATCTTGTTCAGATTAACTTAAACTTAGAGGTGATATATGGTGACACCGATTCAATTATGATTTACAGTGGGCTAGATGATATTCCGAAAGCAAAAGCTATGGCTGGAAAAGTCATTCAGGAGGTCAACAAAAAATATAGGTGCTTGGAAATTGATCTGGATGGTTTGTACAAGAGAATGCTACTTCTTAAGAAAAAGAAATATGCAGCTATCAAGGTGCAGTTTAAAGAAGGGATGCCATATGAGGTTATTGAACGTAAAGGTCTTGATATTGTTCGTCGTGACTGGAGCTTATTATCTAAGGAATTAGGAGACTTTTGTCTTAGTCAAATTTTGTCTGGAGGGTCATGCGATGATGTCGTTGAATCGATTCATAGCTCTCTCATGAAGGTGCAAGAGGAAATGAGGAGTGGACAAGTACCACTGGAAAAATATATCATCACGAAGACATTGACTAAACCTCCTGATGCCTATCCAGATGCCAAAAACCAACCGCATGTTCTCGTGGCACAAAGATTGAAGCAAAATGGTTACTCCACTGGTTGCTCTGTTGGCGATACAATCCCTTATATAATTTGTTATGAGCAGCAGGGAAGTAGTTCAGGCAGTTCGACTGGCATTGCACAGCGTGCTAGACATCCCGATGAACTAAAACGAGAACAAGGGAAATGGATGATTGACATTGATTACTACTTGTCACAACAGATTCACCCTGTGGTATCACGCCTTTGTGCGTCAATTGAGGGCACAAGCTCAGAAAGACTGGCTGATTGTTTAGGGCTTGACTCATCAAAGTTTCAACATAAATCAAGTGCAGTATGCAACAACAATCCTTCAAACTCATTCTTGTTTGCTGCTGACGATGAGGAGAGGTATCGGGGATGTGAACCATTGGTCTTATCATGTTCGAGCTGTTCTGGCACTTTTGACTGTCCCTCTGTTTTCCAATCTATTTGTTTGTTAGGAAGTGAAAAGCAAACAAGCTTAGACATAAAGGAATCCAACTACAACTTTTGGCGTAAGCTGCGCTGTCCTAAATGCTCAGACGAAAATGATGCCAGTAGAATTTCTCCAGCAATGATAGCCAATCAGGTCAAGAGGCAAGCGGAGAAGTTCGTTTCAATGTATTACAGGGGCTTACTAATGTGTGATGATGAAACATGTAAGCATACAACACGGAGTATCAATCTTCGGTTGGTTGGCGATTATGATAGAGGTACTATTTGTCCGAATTATCCTCGCTGCAATGGACGTCTCGTAAGAAAGTACACGGAGGCAGACTTATACAAGCAGCTCTCGTATTTTTGCCACCTATTGGATACTTTTTGCTGTATAGAAAAGATGGAGGCTAAATCTAGGATACCGCTGGAGAAAGAACTGAGCAAAATTAGGCCAATGGTTGATCTGGCGGCATCAACCGTACAAACGATACGAGATCGTTGTGCATATGGATGGGTGCGGTTGCAGGACCTCGCGGTTACTTTTTGA 4650 0.429 MADEQPVTTGRRRGRGAEALVRSEALERLKALRSGRRRSDGGGFQIKLENPIYDTVAEEEYDALVAKRREESRGFIVDDDGLGYGDEGEEEDWSKAGFTLSSDESEGESERPKRKKVEKKDPQPKKSSSSLSAAAAMIGAQRLSSMFTSSVFKKSRDDKVKGFSCDSIVDDVIAEFAPDETDRQRRRRTQANSISGMNNVFPFNSVKSENSRSDLMSSSLLPDVSDNKLESSAVLKDDGCALDLEQNFESVRENASVNEQEHGLLIDSENGQPSVMQSNNSPTNGDIIEEKVLNDVRTETKLAKKEVITLNAKIKEEEDPALSATAGWQATKNGGDISEGDSKVASYASNREDNSDFNLEADGSLPFYILDAHEEFYGANMGTLYLFGKVKAGDSYQSCCVVVKNMKRCVYAIPNRPLLYTDEMIKLEKDVEESRISATDFNKKLQDLVSGLKSEIAKQLLDLNVSTFSMAPVKRKYAFDRSEIPTGENYLLKINYPFKDPPLPVDLKGESFCGLLGTHCSALELFLIKRKIKGPSWLQVSNFSTSSTSQRVSWCKFEVTVDSTKDIRNLTSTKISFEIPPVVVSAVNLKTTINDKQNINEIVSASIVCCHRVKIDTPMLASEWKRPGMLTHFTVVRKLDGGIFPLGFSKDVTDRNSKAGSNVLCVESSERALLNRLLIELHKLDSDVLVGHNISGFDLDVLLHRSQACKVPSSMWSKIGRLKRSVMPKLARGSTIFGSGASPGIMSCIAGRLLCDTYLCSRDLLKEVSYSLTELAKTQLNKVRKEVAPHDVPKKFQSAESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFHAKKYIVPDKIPPHLNQAKLAKRRIAEDSNSDKADIDDRNFDIDAPESDQKKRKKAPSYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSSDGSFPRLPSSKTPGVLPELLKNLVQRRRMVKSWMKNASGLKVQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITTQGRDILQSTVDLVQINLNLEVIYGDTDSIMIYSGLDDIPKAKAMAGKVIQEVNKKYRCLEIDLDGLYKRMLLLKKKKYAAIKVQFKEGMPYEVIERKGLDIVRRDWSLLSKELGDFCLSQILSGGSCDDVVESIHSSLMKVQEEMRSGQVPLEKYIITKTLTKPPDAYPDAKNQPHVLVAQRLKQNGYSTGCSVGDTIPYIICYEQQGSSSGSSTGIAQRARHPDELKREQGKWMIDIDYYLSQQIHPVVSRLCASIEGTSSERLADCLGLDSSKFQHKSSAVCNNNPSNSFLFAADDEERYRGCEPLVLSCSSCSGTFDCPSVFQSICLLGSEKQTSLDIKESNYNFWRKLRCPKCSDENDASRISPAMIANQVKRQAEKFVSMYYRGLLMCDDETCKHTTRSINLRLVGDYDRGTICPNYPRCNGRLVRKYTEADLYKQLSYFCHLLDTFCCIEKMEAKSRIPLEKELSKIRPMVDLAASTVQTIRDRCAYGWVRLQDLAVTF 1549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach10g00453 1549 CDD POLBc_alpha 911 1316 IPR045846 GO:0003887|GO:1902975
Bach10g00453 1549 SUPERFAMILY DNA/RNA polymerases 864 1316 IPR043502 -
Bach10g00453 1549 Pfam DNA polymerase alpha subunit p180 N terminal 26 93 IPR024647 -
Bach10g00453 1549 Pfam DNA polymerase family B 839 1300 IPR006134 GO:0000166|GO:0003677
Bach10g00453 1549 PANTHER DNA POLYMERASE ALPHA CATALYTIC SUBUNIT 19 1547 - -
Bach10g00453 1549 FunFam DNA polymerase 1143 1330 - -
Bach10g00453 1549 Gene3D - 407 533 - -
Bach10g00453 1549 Pfam DNA Polymerase alpha zinc finger 1340 1545 IPR015088 GO:0003887|GO:0006260
Bach10g00453 1549 FunFam DNA polymerase 977 1026 - -
Bach10g00453 1549 Gene3D DNA Polymerase alpha, zinc finger 1339 1534 IPR038256 -
Bach10g00453 1549 FunFam DNA polymerase 580 894 - -
Bach10g00453 1549 SMART polmehr3 580 1079 IPR006172 GO:0000166|GO:0003676|GO:0003887
Bach10g00453 1549 FunFam DNA polymerase 407 533 - -
Bach10g00453 1549 Gene3D - 367 566 - -
Bach10g00453 1549 Gene3D Helix hairpin bin 975 1026 - -
Bach10g00453 1549 NCBIfam DNA polymerase (pol2) 51 1298 - -
Bach10g00453 1549 MobiDBLite consensus disorder prediction 883 917 - -
Bach10g00453 1549 CDD DNA_polB_alpha_exo 580 831 - -
Bach10g00453 1549 Gene3D - 1143 1330 IPR042087 -
Bach10g00453 1549 Gene3D Palm domain of DNA polymerase 905 1130 IPR023211 -
Bach10g00453 1549 PRINTS DNA-directed DNA-polymerase family B signature 936 949 IPR006172 GO:0000166|GO:0003676|GO:0003887
Bach10g00453 1549 PRINTS DNA-directed DNA-polymerase family B signature 1012 1024 IPR006172 GO:0000166|GO:0003676|GO:0003887
Bach10g00453 1549 PRINTS DNA-directed DNA-polymerase family B signature 1065 1073 IPR006172 GO:0000166|GO:0003676|GO:0003887
Bach10g00453 1549 FunFam DNA polymerase 1339 1535 - -
Bach10g00453 1549 ProSitePatterns DNA polymerase family B signature. 1067 1075 IPR017964 GO:0000166|GO:0003676
Bach10g00453 1549 MobiDBLite consensus disorder prediction 883 916 - -
Bach10g00453 1549 Coils Coil 1093 1113 - -
Bach10g00453 1549 SUPERFAMILY Ribonuclease H-like 362 868 IPR012337 -
Bach10g00453 1549 MobiDBLite consensus disorder prediction 321 342 - -
Bach10g00453 1549 Gene3D - 580 897 IPR036397 GO:0003676
Bach10g00453 1549 MobiDBLite consensus disorder prediction 104 125 - -
Bach10g00453 1549 MobiDBLite consensus disorder prediction 76 134 - -
Bach10g00453 1549 Pfam DNA polymerase family B, exonuclease domain 395 774 IPR006133 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach10g00453 Bach-Chr10 3174795 3186184 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach10g00453 1 1547 Core DNA Replication Machinery Family AT5G67100 61.150 0.0 1895
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach10g00453 K02320 - zju:107424534 2243