Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach10g00377 TTTGAACTTTTCACAATTGTAACCGTCTCCCGGTGATTTCTCTGATGCGCTCCACGTAGCATTCAGAAGACCTGATTTCATATGCATTGCATCAACGCAGTGCTTCTAACAATGAAATATTGCTGACTGGACTTTGTGGAATAGCTCTGTTGTTGAACGTCGGGGGATTGATGGATGAGATTGAAGTTATGTAAATCCTTGTGTTGTTTTTTCAATCAGCAGTCAGATTTGGCTAGTTCATGAATCAGCATGCACAAAAAGGCAGTAATCAAACTCACAGTTCTGCTATAGAATAGCCGCAAAGATAAGGCTTTAAAATAAGGGCTGGACTATTTTTTATGGGTGCACCTAAGCAGAAATGGACTGCGGAAGAAGAAGCGGCACTGAAAGCTGGAGTAGTCAAACATGGGGCTGGGAAATGGCGTACTATACTTACAGACCCAGAGTTCAGCCCCATTTTGCGCATGCGTTCAAATGTGGACCTTAAGGATAAGTGGAGGAATATAAATGTGACAGCAATATGGGGATCCAGGCAGAAGGCAAAGCTTGCACTTAAGAGGAACCTTCCAACCCCCAAAAATGACAATAACCAAGTGGCCTTGAGTGTTGTTCAAGGTGATGATGACGGCTCTGATACTAAGCGTCTGGCAGTTTCTGGTGGAACATTGCAGCCTGCTTGTACAAAAGAATCTATATCAAGGTTGGATAATCTTATTTTAGAGGCTATTATCAATTTGAAGGAGCCAAGGGGTTCTGACAGAGCTGCCATTGCTGCTTTCATAGAGGGTCAATGCTTGTCTCCACCAAACCTCAGAAAGTTATTATCAACAAGACTGAAGCGTATGGTGGCAATCGGCAAGTTAGTAAAGGTAAAACACAAGTACAGGATTGCACAAAGTTCAACTATCTCAGAGAAAAGAAGGTGCTCTCCCCTGGTACTGCTAGAAGGAAGGTCCAAAGACTCTCCAAAAGCAGATAAGACTGATGTCAACCTCCTGTCAAAATCCGAGATTGATGTGGAGCTATCAAAAATGAAGGACATGACAGCCCAAGAGGCTGCTGCAGCTGCTGCAAAAGCAATTGCAGAGGCAGAAGTTGCCATTGCAGAAGCTGAGGCAGCAGCAAGGGAGGCGGAGGCTGCAGAAGCTGAAGCTGAGGCTGCCAAAGTGTTTGCAAAAGCAGCCATAAAGGCTTTGAAATGCAGAACACTTCATGTTTGGTAG 1223 0.4432 MGAPKQKWTAEEEAALKAGVVKHGAGKWRTILTDPEFSPILRMRSNVDLKDKWRNINVTAIWGSRQKAKLALKRNLPTPKNDNNQVALSVVQGDDDGSDTKRLAVSGGTLQPACTKESISRLDNLILEAIINLKEPRGSDRAAIAAFIEGQCLSPPNLRKLLSTRLKRMVAIGKLVKVKHKYRIAQSSTISEKRRCSPLVLLEGRSKDSPKADKTDVNLLSKSEIDVELSKMKDMTAQEAAAAAAKAIAEAEVAIAEAEAAAREAEAAEAEAEAAKVFAKAAIKALKCRTLHVW 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach10g00377 294 PANTHER SINGLE MYB HISTONE 4 1 289 IPR044597 GO:0003691
Bach10g00377 294 Coils Coil 241 275 - -
Bach10g00377 294 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Bach10g00377 294 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Bach10g00377 294 Gene3D - 2 59 - -
Bach10g00377 294 SUPERFAMILY Homeodomain-like 2 67 IPR009057 -
Bach10g00377 294 SUPERFAMILY "Winged helix" DNA-binding domain 116 196 IPR036390 -
Bach10g00377 294 CDD SANT_TRF 6 57 - -
Bach10g00377 294 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Bach10g00377 294 SMART h15plus2 116 181 IPR005818 GO:0000786|GO:0003677|GO:0006334
Bach10g00377 294 SMART sant 4 59 IPR001005 -
Bach10g00377 294 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 118 186 IPR005818 GO:0000786|GO:0003677|GO:0006334
Bach10g00377 294 FunFam Telomere repeat-binding factor 1 2 58 - -
Bach10g00377 294 Gene3D - 115 195 IPR036388 -
Bach10g00377 294 Pfam linker histone H1 and H5 family 123 180 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach10g00377 Bach-Chr10 2650578 2654220 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach10g00377 1 294 Single Myb Histone (SMH) Gene Family AT5G67580 57.191 2.36e-84 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Bach10g00377 Linker_histone 4.2e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach10g00377 K09422 - gmx:100796539 362.459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bach4g00431 4 2888785 2892775 Bach10g00377 10 2650578 2654220 BWGD