Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach10g00288 TACAATCGAATTCATGGCAAATCCATCGTCCTCGGCTTCTGCCTCCCAATTCACCTACTCGGACAGTTCATACTTCCCCATGCCTTTTCATCTTCAGCAACCTGCAACCACGGCGGCATCACAGTATGCTGCACCACCCTACATGGCCGCATCGTTGGCGCCACCGGCGGTGCAAATCCCTCCTCACCCGGCTCCGGCTGCAGTGGGCGGCGCTTACTATCTTCCTCAGTATCAGCAAGCACAACAGTTATTCCAGAGGGACGCACAGACAATCACACTTGAAGCTCTGGAGAATGTGAAGGCAGCCATCGCTAACAGCGACATCGAGCAGAAAGCAGAGAGCAAAAAGAAAGCGGTTCCTCGCAAAGTTGCTGGGCAATCATGGGAGGATCCTTCACTGGCAGAGTGGCCAGAGAATGACCATAGGCTATTCTGCGGTGACCTTGGTAATGAGGTGAACGATGATGTCTTGTCAAAAGCATTCTCAAGATATCCTTCCTTTAACATGGCCAGAGTTGTCAGAGATAAGCGTTCCGGGAAAACAAAAGGGTATGGATTTGTTAGCTTTGCTGATCCTTCTGATCTTGCCATGGCTCTTAAAGAGATGAATGGTAAATACGTAGGAAATCGCCCAATCAAACTGTGTAAGAGTAAGTGGAAGGAGAGGACAGATTATGATGCTTTCGAGAAACAAAAGAAACAACCTCGGAAGAAACTGAAAATCTCAAGGACGAGCGTTTTGCATTCCTGAATGGCAAATCCATCGTCCTCGGCTTCTGCCTCCCAATTCACCTACTCGGACAGTTCATACTTCCCCATGCCTTTTCATCTTCAGCAACCTGCAACCACGGCGGCATCACAGTATGCTGCACCACCCTACATGGCCGCATCGTTGGCGCCACCGGCGGTGCAAATCCCTCCTCACCCGGCTCCGGCTGCAGTGGGCGGCGCTTACTATCTTCCTCAGTATCAGCAAGCACAACAGTTATTCCAGAGGGACGCACAGACAATCACACTTGAAGCTCTGGAGAATGTGAAGGCAGCCATCGCTAACAGCGACATCGAGCAGAAAGCAGAGAGCAAAAAGAAAGCGGTTCCTCGCAAAGTTGCTGGGCAATCATGGGAGGATCCTTCACTGGCAGAGTGGCCAGAGAATGACCATAGGCTATTCTGCGGTGACCTTGGTAATGAGGTGAACGATGATGTCTTGTCAAAAGCATTCTCAAGATATCCTTCCTTTAACATGGCCAGAGTTGTCAGAGATAAGCGTTCCGGGAAAACAAAAGGGTATGGATTTGTTAGCTTTGCTGATCCTTCTGATCTTGCCATGGCTCTTAAAGAGATGAATGGTAAATACGTAGGAAATCGCCCAATCAAACTGTGTAAGAGTAAGTGGAAGGAGAGGACAGATTATGATGCTTTCGAGAAACAAAAGAAACAACCTCGGAAGAAACTGAAAATCTCAAGGACGAGCGTTTTGCATTCCTGATCAGCAGACTGAATATATGAAGCTGATGATTGCTGGTTGAACCAAAGTAAACTAGTTGGTTCCCTGGTAATGCTGGAGCTCTGTGTTGATCAATTATTTTCGAATTTCAAAGCTTTTTCTTGTTGCAATGTTGTTGGCTGACAACTTTTGTAGCACTTCCAAAATGCACTTTCAAGTTGGATATTTAAGAATTTTCCATAGTATAGGAGGTGGATGGATTGCTACTTCTAAGCCAAGGTTTCTCCTCCTTTGTATACGGTTGATGTTGCGGAATTATTGTTGCTTGTGGATTATCTACTGATAAACCAGTATTTAGTACTGGTGTTTTAAGTTGCAATTTATG 1832 0.4662 MANPSSSASASQFTYSDSSYFPMPFHLQQPATTAASQYAAPPYMAASLAPPAVQIPPHPAPAAVGGAYYLPQYQQAQQLFQRDAQTITLEALENVKAAIANSDIEQKAESKKKAVPRKVAGQSWEDPSLAEWPENDHRLFCGDLGNEVNDDVLSKAFSRYPSFNMARVVRDKRSGKTKGYGFVSFADPSDLAMALKEMNGKYVGNRPIKLCKSKWKERTDYDAFEKQKKQPRKKLKISRTSVLHS 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach10g00288 245 MobiDBLite consensus disorder prediction 230 245 - -
Bach10g00288 245 SMART rrm1_1 138 211 IPR000504 GO:0003723
Bach10g00288 245 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 137 215 IPR000504 GO:0003723
Bach10g00288 245 MobiDBLite consensus disorder prediction 226 245 - -
Bach10g00288 245 Gene3D - 74 211 IPR012677 -
Bach10g00288 245 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 139 209 IPR000504 GO:0003723
Bach10g00288 245 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 67 227 - -
Bach10g00288 245 SUPERFAMILY RNA-binding domain, RBD 122 218 IPR035979 GO:0003676
Bach10g00288 245 FunFam RNA-binding protein 42 72 222 - -
Bach10g00288 245 CDD RRM_RBM42 131 213 IPR034215 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach10g00288 Bach-Chr10 2023535 2024628 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach10g00288 139 238 Eukaryotic Initiation Factors Gene Family AT1G71770 29.126 1.15e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach10g00288 K25079 - qsa:O6P43_011258 330.487