Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach10g00177 ATGCAAGAACCCAGCTTGGGAATGATGGGTGGTGGTGGTTTAAGCGGAGATTTATCCGGTTCCGGCGATCACCACCGACAACTGAAGGCAGAGATAGCGACTCATCCACTCTACGAACAACTTCTAGCAGCCCATATCTCTTGTCTCCGTGTTGCCACTCCCATCGATCAGCTTCCACTCATCGATGCTCAGTTGTCTCAGTCACACCATCTTCTACGTTCTTATGCCTCCCAGCTTTCCCATTCCCTTTCACCTCATGACCGCCAAGAACTTGACAATTTCCTGGCACAGTATCTGATAGTGCTGTGTACTTTCAAAGAACAGCTTCAGCAACATGTCAGAGTCCACGCCGTCGAGGCTGTCATGGCCTGCCGTGATATTGAAAATACCTTGCAAGCTCTCACAGGAGTAAGCTTGGGAGAAGGAAGTGGTGCAACAATGTCAGATGATGAAGATGATTTGCAGATGGATTTCTCTTTAGATCAGGCTGGAGCTGAAGGGCACGACATGATGGGTTTTGGTCCATTAATGCCTACAGAATCTGAAAGGTCACTGATGGAAAGAGTTCGTCAAGAACTAAAGATTGAGCTGAAGCAGGGTTTTAAGTCAAGAATTGAAGATGTAAGGGAGGAAATATTAAGGAAACGACGAGCTGGGAAATTACCAGGTGACACAACTTCGGTTTTGAAAACTTGGTGGCAGCAGCATTCAAAGTGGCCCTACCCAACGGAAGATGACAAGGCAAAACTTGTGGAGGAGACAGGGTTGCAACTGAAGCAAATCAATAATTGGTTCATCAATCAAAGGAAGCGCAATTGGCACAGCAACTCTCAATCAGTCACCTCTTTAAAGTCCAAGCGCAAGAGGTAGACAAATTTGACCCTGTTGAGTAACAGCAACCAACTTTTATATATGGACTTACTTTATGCTGATAGGAGACTAGTCCCACTAAGGAGATGCCGGAGGTAGTAGATGGTGTAAGATAGCCTAAGAAATTGAGCCTGTAAATTTATGGATTCGACCTAAGTACGGGATGCAAACTTTCTGCTAGCTAGCTAGCTAGATCCTTCTCTTTTACCCGTGAATATGAATTGTGATTGCTTCCATTTCTTTCCACGAGGAATGTGCGGCTTTAACTCTCTTTGTAAATTTTCTTTTGCTATGTTTTTGACCTGCTGAAAAACAAGTCT 1190 0.4471 MQEPSLGMMGGGGLSGDLSGSGDHHRQLKAEIATHPLYEQLLAAHISCLRVATPIDQLPLIDAQLSQSHHLLRSYASQLSHSLSPHDRQELDNFLAQYLIVLCTFKEQLQQHVRVHAVEAVMACRDIENTLQALTGVSLGEGSGATMSDDEDDLQMDFSLDQAGAEGHDMMGFGPLMPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKTWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRKR 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach10g00177 289 SUPERFAMILY Homeodomain-like 214 279 IPR009057 -
Bach10g00177 289 SMART HOX_1 214 279 IPR001356 GO:0003677
Bach10g00177 289 MobiDBLite consensus disorder prediction 1 22 - -
Bach10g00177 289 Pfam Homeobox KN domain 232 271 IPR008422 GO:0003677|GO:0006355
Bach10g00177 289 ProSiteProfiles 'Homeobox' domain profile. 212 275 IPR001356 GO:0003677
Bach10g00177 289 CDD homeodomain 215 276 IPR001356 GO:0003677
Bach10g00177 289 Gene3D - 211 285 - -
Bach10g00177 289 Pfam KNOX1 domain 28 69 IPR005540 GO:0003677|GO:0005634
Bach10g00177 289 SMART KNOX1_2 26 70 IPR005540 GO:0003677|GO:0005634
Bach10g00177 289 ProSiteProfiles ELK domain profile. 192 212 IPR005539 GO:0003677
Bach10g00177 289 SMART KNOX2_2 81 136 IPR005541 GO:0003677|GO:0005634
Bach10g00177 289 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 66 276 - -
Bach10g00177 289 FunFam homeobox protein knotted-1-like 3 isoform X1 213 274 - -
Bach10g00177 289 Pfam KNOX2 domain 84 135 IPR005541 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach10g00177 Bach-Chr10 1241187 1245690 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach10g00177 1 288 Homeobox Transcription Factor Family AT1G62990 79.795 2.31e-174 481
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Bach10g00177 KNOX2 2.8e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach10g00177 - - qsu:111989291 518.464
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bach10g00177 10 1241187 1245690 Bach4g00193 4 1284437 1288487 BWGD
Bach10g00177 10 1241187 1245690 Bach10g00177 10 1241187 1245690 ECH