Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bach10g00144 | ATGGCGTTCAGCGGGACCCAACAGAAATGCAAGGCTTGCGACAAAACTGTACATTTCGTGGACTCATTGTCAGCCGATGGTGCTGTTTATCACAAGCCCTGCTTCAAATGTAGCCATTGCAACGGGCAACTTGCTATAAGCACCTACTCCTCCATGGATGGAGTCTTGTACTGCAAACCTCACTTTGAGCAGCTTTACAAGGAGACCGGTAACTTGGCAAAGAAGTTCCAGACAGCTGGAATGCGTCAGAATGAGCAGCTGGGCAGGACTCCTAGCAAACTCTCCACCTTCTTCTCTGGGACCCAAGACAAATGTTCATCCTGCAAGAAAACTGTATACCCATTGGAGAAGGTCACCGTGGAAGGAGAATTTTACCATAAGTCATGCTTCAGATGCGCTCATGGAGGATGCTTCCTCAACGCTTCATCCTATGCTGCTCTTGATGGATTTGTTTACTGCAAGCACCATTTTGCTCAGTTGTTCAAGGAGAAAGGTAGCTATAGTTATCTCCTCAAGGCAACTTCAATGAAGAAAAATGAATCGCAACAGGCAGCGGAGAACACCGAATCAGAAGCAGAGAAAACAAAGGAACAAGAACAAGAAGATGCTCAAGAGCAATAA | 621 | 0.4622 | MAFSGTQQKCKACDKTVHFVDSLSADGAVYHKPCFKCSHCNGQLAISTYSSMDGVLYCKPHFEQLYKETGNLAKKFQTAGMRQNEQLGRTPSKLSTFFSGTQDKCSSCKKTVYPLEKVTVEGEFYHKSCFRCAHGGCFLNASSYAALDGFVYCKHHFAQLFKEKGSYSYLLKATSMKKNESQQAAENTESEAEKTKEQEQEDAQEQ | 206 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bach10g00144 | 206 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 97 | 130 | - | - | |
| Bach10g00144 | 206 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 36 | 76 | - | - | |
| Bach10g00144 | 206 | Pfam | LIM domain | 105 | 160 | IPR001781 | - | |
| Bach10g00144 | 206 | Pfam | LIM domain | 10 | 64 | IPR001781 | - | |
| Bach10g00144 | 206 | PANTHER | OS06G0237300 PROTEIN | 5 | 78 | - | - | |
| Bach10g00144 | 206 | SMART | lim_4 | 104 | 156 | IPR001781 | - | |
| Bach10g00144 | 206 | SMART | lim_4 | 9 | 61 | IPR001781 | - | |
| Bach10g00144 | 206 | ProSitePatterns | LIM zinc-binding domain signature. | 10 | 44 | IPR001781 | - | |
| Bach10g00144 | 206 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 3 | 35 | - | - | |
| Bach10g00144 | 206 | Coils | Coil | 171 | 205 | - | - | |
| Bach10g00144 | 206 | FunFam | LIM domain and actin-binding 1 | 4 | 74 | - | - | |
| Bach10g00144 | 206 | MobiDBLite | consensus disorder prediction | 180 | 206 | - | - | |
| Bach10g00144 | 206 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 131 | 169 | - | - | |
| Bach10g00144 | 206 | CDD | LIM1_SF3 | 6 | 68 | - | - | |
| Bach10g00144 | 206 | ProSiteProfiles | LIM domain profile. | 103 | 163 | IPR001781 | - | |
| Bach10g00144 | 206 | Gene3D | Cysteine Rich Protein | 4 | 74 | - | - | |
| Bach10g00144 | 206 | Gene3D | Cysteine Rich Protein | 99 | 169 | - | - | |
| Bach10g00144 | 206 | MobiDBLite | consensus disorder prediction | 187 | 206 | - | - | |
| Bach10g00144 | 206 | ProSiteProfiles | LIM domain profile. | 8 | 68 | IPR001781 | - | |
| Bach10g00144 | 206 | FunFam | LIM domain and actin-binding 1 | 99 | 169 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Bach10g00144 | Bach-Chr10 | 1025012 | 1025974 | Dispersed/Wgd |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | LIM | Bach10g00144 | LIM | 6.6e-11 | CL0167 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bach10g00144 | - | K24413 | zju:107429947 | 330.487 |