Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach10g00122 ATGGGCCGTGCAAGATTGCCGGTGGTATTCATCGAAAGAGAGAAGTGCCGTAAGGCGACTTTTAACAAGAGAACGCAGGGACTAAAGAAAAAATGCTTTGAATTTTCGACTCTCTGTGGTGTTGATGCTGCCATGATAATCTATGGCCCAGATTCTGAGAATGCTGAAGCAGAGATTTGGCCTGAAGACCCCACAGAGGTACGGCGCATTATCGAAAGATACCAGGCCAAGATTGCTGAGCAGCGCCCCAAGAGCTATGATGTGATTGCCTTCTTCAAAGATAGGCAGAACAAGGTTGAAGCTGAGATTGTCAAAGTGCAGAAAAGGATCCGTGAGGTCTTGTATCCAACTTGGCATGATAGTTTCAACAATCTAGATGAGGACTCGCTCACAAGGTTTATTGATGCCTTGGATGCTAAGATTGAAGCTTGTAATCAAAGGATCACCATGTTGAAGCAAATTGGCAACCTAAAGGGAAAAGCACCTGCAGCCGAATCCTCCGCAACTGGAAGCCACCTCCCCTTCATGCTCAATGTGCCTCAGCGCCAACTTAATCTTGCTCCTTTTATGGGTCCACTTGCTGATAACAATCACAATAATCTGCTGCCATATTACCCTTCACCTCAAATTGATAAGGGTTCTGCTTCATCTTCATCTTATATGTTTAATGTTGAGCCAAATCTGTTGCCAAGAATGAATGAAATGGTGGATCATTGGAGTGGATTCCCACCCAGTTATTATAATGGAATGCAAATTCATAGTAATAACTATTATCCTACTGCTGCTCTACAGAATATTCCTTCTCAGAATATCAAGTACGAAGCAGCTAGTTTTCAGAATAGGCCACCACAACCAATGCAGGGACTTCAACCAAATAGCTTCTATCCTATGCTTCAAGCTGAGACACTCAATTCTGTCAACATGAACAAGTAA 933 0.4319 MGRARLPVVFIEREKCRKATFNKRTQGLKKKCFEFSTLCGVDAAMIIYGPDSENAEAEIWPEDPTEVRRIIERYQAKIAEQRPKSYDVIAFFKDRQNKVEAEIVKVQKRIREVLYPTWHDSFNNLDEDSLTRFIDALDAKIEACNQRITMLKQIGNLKGKAPAAESSATGSHLPFMLNVPQRQLNLAPFMGPLADNNHNNLLPYYPSPQIDKGSASSSSYMFNVEPNLLPRMNEMVDHWSGFPPSYYNGMQIHSNNYYPTAALQNIPSQNIKYEAASFQNRPPQPMQGLQPNSFYPMLQAETLNSVNMNK 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach10g00122 310 PANTHER MADS BOX PROTEIN 11 148 - -
Bach10g00122 310 SMART madsneu2 1 62 IPR002100 GO:0003677|GO:0046983
Bach10g00122 310 CDD MADS_SRF_like 2 82 IPR033897 GO:0000981|GO:0000987|GO:0045944
Bach10g00122 310 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 52 IPR002100 GO:0003677|GO:0046983
Bach10g00122 310 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Bach10g00122 310 Gene3D - 14 98 IPR036879 GO:0003677|GO:0046983
Bach10g00122 310 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bach10g00122 310 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bach10g00122 310 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bach10g00122 310 SUPERFAMILY SRF-like 1 82 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach10g00122 Bach-Chr10 869731 870663 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach10g00122 1 147 Type I MADS-box Gene Family AT5G55690 35.099 1.39e-21 90.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Bach10g00122 SRF-TF 1.7e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach10g00122 - - aip:107620908 202.601