Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst9g04375 ATGGCAACAAACAGGTTCATATGCGAGGTATGCAACAAAGGGTTCCAAAGGGAGCAAAACCTACAGCTACACAGAAGAGGACACAACCTACCATGGAAGCTGAAGCAGAAGACGAACAAAGAGCCAAAGAGAAAGGTTTATCTGTGCCCCGAACCCACGTGTGTCCACCACGACCCTTCCAGGGCCTTGGGAGACCTCACTGGGATCAAGAAGCATTACTCTCGCAAGCATGGCGAGAAGAAGTGGAAGTGTGACAAGTGTTCTAAGAAATATGCTGTTCAATCCGATTGGAAGGCTCATTCTAAAACTTGCGGAACCAGAGAGTATAGATGCGATTGTGGCACTCTCTTCTCTAGACGTGACAGTTTCATCACTCATAGGGCCTTCTGTGATGCCCTAGCTCAAGAAAGTGCAAGGCACCCAAATGGCACCATGAACCCTTTGGGAGGGACACATTTGTATGCCACAAACACAAACCACATGACCTTAGGCCTCTCCCAATTAGGCACCCAAATCTCCCAATTCCAGAATCACCAAAGTGGCGCCACTCACGGCAGCGGCGGCGGCGGCATCCTCCGTCTCGGGAGCGCCGGGGCAGCCAAATTCGAGCACTTAATCCCGCCTTTAAGCCATCAGTCTTCATCATTTGGACACTCACCCCAATCATCACTCACTAATCCCTCACCTTTCTTCATCAATGACCCAAATCAAGCATTTGAAGACAACAACCAAACTCATCAACAAGGTTCATTATTCTCAAGCAAGCAATTACATGGTCTAATGCAACTTCCTGATCTTCAAGGAAACACCACCAACACCAACTCTAATAATTCTTCCAATCTTTTCAACCTTAGCTTCTTCCCAAACAACAACAATAGCAGTGGAACCATCATCCCTGACCAATTCAATAGTAACCAACAAGGAACAACAACATCAACACTCTACGGTGACCAAGTTGGTTCAGGTTTGTCTTCACTCTTTGGAAATTCATCTTCATTGCAACATGAGAACGTGTCCCCTCATATGTCAGCCACTGCATTGCTTCAGAAAGCTGCACAAATGGGTCCAACTACCACCACCAACAATAATAATGGTTCTTCTATCCTTAGGGGAATGTGTAGTAGTTCCTCAAACAAATCCGAAAGGGAACTTGTTGTCTCTGATCATGTTGCATTTGGAAGTGATCAAAGAAGATCAAGCATGGAAAATGATCATCACCACCAGCAACACCTTCATGGGTTGATGAACTCCATTGCCAGTAATGTAGGAAACACTACTACTAGTTCCATATTTGACAATGTGCATCAAGGGAATGATGATAACAACAACAACCTCAGTCATCATCATCATCATCATCATCATCATCAGTTTCATCAGAGCCTAGAGGATTCTAGTAACACCAATAAGCTTCCTCAGAATCATCTTGGGGTCAGTTTTGGAGGGTCTGATAAGTTGACATTGGATTTTCTTGGAGTTGGAGGAATGGTAAGAAACATCAACACTGGTGCAACAACACACGCATTTTCACAAACACATAGAGAGCAACAACAACAAGGAATGATGAGTACCTTGAGTTCTTTGGATTCGGACCTGAAATCAGCACAATCAGCCACACCAAGCCACCGTTTTTGA 1632 0.4485 MATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTNKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARHPNGTMNPLGGTHLYATNTNHMTLGLSQLGTQISQFQNHQSGATHGSGGGGILRLGSAGAAKFEHLIPPLSHQSSSFGHSPQSSLTNPSPFFINDPNQAFEDNNQTHQQGSLFSSKQLHGLMQLPDLQGNTTNTNSNNSSNLFNLSFFPNNNNSSGTIIPDQFNSNQQGTTTSTLYGDQVGSGLSSLFGNSSSLQHENVSPHMSATALLQKAAQMGPTTTTNNNNGSSILRGMCSSSSNKSERELVVSDHVAFGSDQRRSSMENDHHHQQHLHGLMNSIASNVGNTTTSSIFDNVHQGNDDNNNNLSHHHHHHHHHQFHQSLEDSSNTNKLPQNHLGVSFGGSDKLTLDFLGVGGMVRNINTGATTHAFSQTHREQQQQGMMSTLSSLDSDLKSAQSATPSHRF 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst9g04375 543 SUPERFAMILY beta-beta-alpha zinc fingers 5 102 IPR036236 -
Arst9g04375 543 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 514 IPR031140 -
Arst9g04375 543 SMART c2h2final6 6 28 IPR013087 -
Arst9g04375 543 SMART c2h2final6 82 102 IPR013087 -
Arst9g04375 543 SMART c2h2final6 47 77 IPR013087 -
Arst9g04375 543 MobiDBLite consensus disorder prediction 513 543 - -
Arst9g04375 543 MobiDBLite consensus disorder prediction 426 441 - -
Arst9g04375 543 MobiDBLite consensus disorder prediction 211 248 - -
Arst9g04375 543 FunFam Zinc finger protein MAGPIE 2 29 - -
Arst9g04375 543 Gene3D Classic Zinc Finger 6 50 - -
Arst9g04375 543 MobiDBLite consensus disorder prediction 426 478 - -
Arst9g04375 543 Pfam Zinc-finger double-stranded RNA-binding 6 28 IPR022755 -
Arst9g04375 543 MobiDBLite consensus disorder prediction 461 475 - -
Arst9g04375 543 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 28 IPR013087 -
Arst9g04375 543 Gene3D Classic Zinc Finger 60 139 - -
Arst9g04375 543 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Arst9g04375 543 FunFam protein indeterminate-domain 5, chloroplastic-like 60 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst9g04375 Arst-Chr9 118936499 118940961 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst9g04375 1 500 C2H2 Transcription Factor Family AT2G02080 45.669 1.17e-117 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Arst9g04375 zf-C2H2_jaz 3.3e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst9g04375 K25870 - gmx:100780268 529.25