Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst9g04359 ATGGGTGGTGGGAGTGAGAAGAACTCCAAGGCCATGATGGTTGTGGCGCGTTTGGCTGAGTCCATAAAGGAGGTTTCAGGGCTTCCAGAGTGCAACAACGTTTGCAAGAGGATTTATGGGAATCTGGTTAGGAGGGTGAAGCTTTTGAGCCCTCTCTTTGAAGAATTGAAGGACAGTGATGATGAGTCCCTCCTCAGTGATGAACAAGTTGCAGCTTTTGAGTGTCTCAACGTTGCATTGGATTCAGCTAAGACTCTTCTTAACTCTGTGAACCATGGGAGTAAGCTTTATCAGGCTTTGCAGAGGAATGATACAATAGCTAAGTTCCAACAAATAACTGAAAAAATTGAAGAGGCATTATGTGGAATTTCCTACGACAAACTTGAGATATCGGAGGAAGTTCAGGAACAGATTGAACTGGTGCATGCTCAATTCAAAAGAGCCAAAAATCCTACAGAATTTGCTGATTTACAACTAGATTTGGATATGGAAGTAGCACAGAAAGAAAAAGACCCTGATCCTGCTGTCCTCAAAAGACTTTCCGACAAGTTGCATTTGAGGACTATAAATGATCTGAAGAAAGAGTCTGCTGAGTTACACGAATTGGTTATCACAAGTGGTGGGGAACCAGGAGAATATTTTGAGACAATAACATCCCTTCTTAGGAAACTGAAGGACTGCGTGTTAACCGAAAATCCTGAGGTTGATAACAATGATGATGGAAAAGTGCCAATTAAGCACAGGTCTCCGGTAATCCCAGATGATTTTCGATGTCCTATATCTCTTGAACTGATGAAAGATCCTGTAATTGTCTCTACTGGTCAGACATATGAAAGATCATGCATTCAGAAATGGCTTGATGCTGGTCACAAAACCTGCCCCAAGACGCAGCAGACACTTTTGCATACTGCCCTTACCCCTAACTATGTTTTGAAGAGTTTGATCGCTTTATGGTGCGAAAGCAATGGTGTTGAGCTACCGAAGAAGCAGGGGAGCTGTAGAGCAAAGAAATCCGGAAGCAATCATTCGGATTGTGACAGAACTGCTATTAACACATTATTGGATAAACTAGCAAACGGTGATATGGAGCAGCAGAGAGCAGCTGCTGGTGAACTCCGGTTGCTGGCTAAAAGGAATGCAGATAACCGAGTGTGTATTGCCGAGGCAGGAGCAATACCACTTCTTGTGGAATTGTTGTCTTCTTCGGATCCTCGAACGCAGGAGCATGCTGTTACAGCACTTCTTAATCTTTCAATCAATGAGAGCAACAAAGGAACTATAGTAAATGCAGGAGCTATACCGGATATCGTAGATGTACTGAAAAGTGGCAGCATGGAGGCTAGAGAAAACGCAGCTGCAACACTCTTTAGCTTATCCGTTCTAGATGAGAACAAGGTTGCAATAGGAGCAGCTGGAGCTATCCCAGTTCTTATAAAGTTACTTTGCGAAGGTACTCCGAGAGGTAAGAAGGATGCGGCTACTGCGATCTTTAATCTTTCCATCTATCAAGGAAACAAAGCAAGAGCCATCAAAGCCGGTATAGTAGCCCCATTAATGCGATTTTTGAAGGATGCCGGGGGTGGTATGGTAGACGAAGCACTAGCTATAATGGCAATCCTTGCAAGCCACCATGAAGGAAGGATAGCAATCGGTCAGGCTGAGCCAATCCCTATTCTAGTGGAGGTTATACGAACCGGGTCTCCACGCAACAGGGAGAATGCCGTGGCCGTATTGTGGTCGCTTTGCACGGGAGATCTAATGCAATTGAAACTAGCAAAGGAACTTGGCGCAGAAGAAGTGTTACACGAATTATCTGAAAATGGCACAGATAGAGCCAAGAGAAAAGCAGGAAGCATATTAGAAGTCTTACAGCGGATTGAAGGGGATCAGAATGTGCAAAGTTCTTAG 1908 0.4408 MGGGSEKNSKAMMVVARLAESIKEVSGLPECNNVCKRIYGNLVRRVKLLSPLFEELKDSDDESLLSDEQVAAFECLNVALDSAKTLLNSVNHGSKLYQALQRNDTIAKFQQITEKIEEALCGISYDKLEISEEVQEQIELVHAQFKRAKNPTEFADLQLDLDMEVAQKEKDPDPAVLKRLSDKLHLRTINDLKKESAELHELVITSGGEPGEYFETITSLLRKLKDCVLTENPEVDNNDDGKVPIKHRSPVIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTPNYVLKSLIALWCESNGVELPKKQGSCRAKKSGSNHSDCDRTAINTLLDKLANGDMEQQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSSDPRTQEHAVTALLNLSINESNKGTIVNAGAIPDIVDVLKSGSMEARENAAATLFSLSVLDENKVAIGAAGAIPVLIKLLCEGTPRGKKDAATAIFNLSIYQGNKARAIKAGIVAPLMRFLKDAGGGMVDEALAIMAILASHHEGRIAIGQAEPIPILVEVIRTGSPRNRENAVAVLWSLCTGDLMQLKLAKELGAEEVLHELSENGTDRAKRKAGSILEVLQRIEGDQNVQSS 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst9g04359 635 Gene3D - 8 125 IPR036537 GO:0007166
Arst9g04359 635 PANTHER U BOX DOMAIN-CONTAINING 36 623 - -
Arst9g04359 635 FunFam RING-type E3 ubiquitin transferase 11 126 - -
Arst9g04359 635 SMART Ubox_2 255 318 IPR003613 GO:0004842|GO:0016567
Arst9g04359 635 FunFam RING-type E3 ubiquitin transferase 349 463 - -
Arst9g04359 635 Pfam Armadillo/beta-catenin-like repeat 462 500 IPR000225 GO:0005515
Arst9g04359 635 Pfam Armadillo/beta-catenin-like repeat 379 418 IPR000225 GO:0005515
Arst9g04359 635 Pfam U-box domain 252 322 IPR003613 GO:0004842|GO:0016567
Arst9g04359 635 CDD MLKL_NTD 15 146 - -
Arst9g04359 635 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 431 473 IPR000225 GO:0005515
Arst9g04359 635 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 250 325 IPR013083 -
Arst9g04359 635 FunFam RING-type E3 ubiquitin transferase 464 634 - -
Arst9g04359 635 CDD RING-Ubox_PUB 253 305 IPR045210 -
Arst9g04359 635 ProSiteProfiles U-box domain profile. 251 325 IPR003613 GO:0004842|GO:0016567
Arst9g04359 635 Gene3D - 461 624 IPR011989 -
Arst9g04359 635 SUPERFAMILY RING/U-box 251 327 - -
Arst9g04359 635 SMART arm_5 461 501 IPR000225 GO:0005515
Arst9g04359 635 SMART arm_5 543 583 IPR000225 GO:0005515
Arst9g04359 635 SMART arm_5 420 460 IPR000225 GO:0005515
Arst9g04359 635 SMART arm_5 502 542 IPR000225 GO:0005515
Arst9g04359 635 SMART arm_5 379 419 IPR000225 GO:0005515
Arst9g04359 635 Gene3D - 333 460 IPR011989 -
Arst9g04359 635 FunFam RING-type E3 ubiquitin transferase 252 325 - -
Arst9g04359 635 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 390 432 IPR000225 GO:0005515
Arst9g04359 635 SUPERFAMILY ARM repeat 347 623 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst9g04359 Arst-Chr9 118786501 118790208 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst9g04359 14 628 U-box Gene Family AT3G54850 66.234 0.0 810
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst9g04359 - - gmx:100777452 1011.91